Population structure of Phytophthora capsici in the state of Tennessee

Abstract

The plant pathogen Phytophthora capsici can be found all throughout the USA, and the population genetics of this organism have been studied within many of these states. Until now, no work has been done in the state of Tennessee to investigate the population structure and genetics of P. capsici found there. The population structure of P. capsici was explored using 296 isolates collected from five counties in Tennessee in 2004, 2007, 2018, and 2019. Samples were genotyped using 39 single nucleotide polymorphism (SNP) genetic markers. Multiple analyses indicate that the population structure of P. capsici in Tennessee exists in isolated clusters structured by geography. Geographically separate populations were genetically distinct, suggesting there is limited or no outcrossing among populations, but there is significant sexual reproduction occurring within populations. These findings corroborate previous studies of P. capsici throughout the midwestern and northeastern USA, where populations are generally sexually reproducing and structured by geography. This study provides the first characterization of P. capsici population structure in Tennessee.