Abstract

Recent research suggests that the frequency of polyploidy may have been underestimated in gymnosperms. One notable example is in the conifer genus Juniperus, where there are already a few reports of polyploids although data are still missing for most species. In this study, we evaluated the extent of polyploidy in Juniperus by conducting the first comprehensive screen across nearly all of the genus. Genome size data from fresh material, together with chromosome counts, were used to demonstrate that genome sizes estimated from dried material could be used as reliable proxies to uncover the extent of ploidy diversity across the genus. Our analysis revealed that 16 Juniperus taxa were polyploid, with tetraploids and one hexaploid being reported. Furthermore, by analyzing the genome size and chromosome data within a phylogenetic framework we provide the first evidence of possible lineage-specific polyploidizations within the genus. Genome downsizing following polyploidization is moderate, suggesting limited genome restructuring. This study highlights the importance of polyploidy in Juniperus, making it the first conifer genus and only the second genus in gymnosperms where polyploidy is frequent. In this sense, Juniperus represents an interesting model for investigating the genomic and ecological consequences of polyploidy in conifers.

Highlights

  • Polyploidy or whole genome duplication (WGD) is the heritable condition of possessing more than two complete sets of chromosomes (Comai, 2005)

  • The genome size estimates for Juniperus ranged 3.2-fold but they were seen to be distributed into three non-overlapping classes (Figure 1), class A: 21.81–30.3 pg/2C, B: 46.29–50.7 pg/2C, and C: 70.58 pg/2C

  • Polyploidy or whole genome duplication is rare in conifers

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Summary

Introduction

Polyploidy or whole genome duplication (WGD) is the heritable condition of possessing more than two complete sets of chromosomes (Comai, 2005). This highlights the importance of polyploidy in the very early evolution of conifers in contrast to the extreme rarity of this phenomenon among extant species [estimated to be 1.5% based on chromosome counts (Khoshoo, 1959; Husband et al, 2013; Rice et al, 2015)]. Polyploidy has been reported in over 65% of extant Ephedra species (Ickert-Bond et al, 2015) In this genus no evidence for any ancient WGDs has been detected in its ancestry (Li et al, 2015)

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