Abstract
Polymorphism of PIT-1 Genes and its Relationship with Traits in the Limousine Cattle Breed
Highlights
F igs are one of the most important human-domesticated P e animals worldwide
The SNPs was used to ensure that all mate-pair information was data of Northeast wild boar, Min pig and Yorkshire were synchronized between each read and its mate pair, and the compared, because their genomic differences represented “Mark Duplicates” command was used to mark potential the various degrees of artificial selection
SNP and InDel calling from sequencing data After alignment, SNP calling for the two populations (Min pigs and Northeast wild boars) was performed using the Bayesian approach as implemented in the GATK
Summary
F igs are one of the most important human-domesticated P e animals worldwide. Globally, pork accounts for a high lin proportion of human meat consumption, especially in. The SNPs was used to ensure that all mate-pair information was data of Northeast wild boar, Min pig and Yorkshire were synchronized between each read and its mate pair, and the compared, because their genomic differences represented “Mark Duplicates” command was used to mark potential the various degrees of artificial selection. SNP and InDel calling from sequencing data After alignment, SNP calling for the two populations (Min pigs and Northeast wild boars) was performed using the Bayesian approach as implemented in the GATK. High-quality paired-end reads were mapped to the quality InDels were defined as those which met four pig reference genome sequence (Sus scrofa 10.2) using criteria: coverage depth ≥8 and ≤1000; Phred-scaled.
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