Plant growth and oil contamination alter the diversity and composition of bacterial communities in agricultural soils across China

Abstract

AbstractThe dynamics of microbial diversity in response to biotic and abiotic disturbances provide a sensitive indicator for evaluating the potential stability and degradation of soils in agro‐ecosystems. To determine the effect on soil bacterial communities of disturbances by plant growth (Robinia pseudoacacia) and oil contamination, we sequenced 16S rRNA genes using MiSeq technology. A greenhouse experiment was conducted using 21 agro‐soils from 19 provinces in China. Abiotic and biotic disturbances, including treating the soils with sterile water, crude oil, and/or an invasive plant, altered the bacterial community structure in the soils, increased bacterial richness, and reduced bacterial dispersion. Oil contamination exerted stronger effects on the bacterial α‐ and β‐diversity than plant growth. The different responses of bacterial communities and the core microbiome indicated that the disturbances shifted the prevalent soil microbial groups in agro‐ecosystems. Among different sampling sites, community dissimilarity increased with spatial distance. Edaphic factors (deterministic processes) exerted the primary influence on the assembly of soil microbiomes in agricultural fields, whereas geographic factors (stochastic processes) were less influential. The bacterial communities in agro‐soils from warmer regions were more sensitive to the disturbances. This study provides new insight into the alteration of soil microbiota by plant growth and oil contamination in agro‐ecosystems across a large spatial scale.