Abstract

Populus (Salicaceae) is one of the most economically and ecologically important genera of forest trees. The complex reticulate evolution and lack of highly variable orthologous single-copy DNA markers have posed difficulties in resolving the phylogeny of this genus. Based on a large data set of nuclear and plastid DNA sequences, we reconstructed robust phylogeny of Populus using parsimony, maximum likelihood and Bayesian inference methods. The resulting phylogenetic trees showed better resolution at both inter- and intra-sectional level than previous studies. The results revealed that (1) the plastid-based phylogenetic tree resulted in two main clades, suggesting an early divergence of the maternal progenitors of Populus; (2) three advanced sections (Populus, Aigeiros and Tacamahaca) are of hybrid origin; (3) species of the section Tacamahaca could be divided into two major groups based on plastid and nuclear DNA data, suggesting a polyphyletic nature of the section; and (4) many species proved to be of hybrid origin based on the incongruence between plastid and nuclear DNA trees. Reticulate evolution may have played a significant role in the evolution history of Populus by facilitating rapid adaptive radiations into different environments.

Highlights

  • The genus Populus, distributed throughout the northern hemisphere from subtropical to boreal forests [1] and one of the most economically and ecologically important genera of forest trees [2], is well known for its rapid growth, profuse vegetative propagation, environmental stress tolerance and the numerous uses of its wood [3]

  • After removing regions with mononucleotide repeats and microsatellite sequences, the aligned length of the nuclear DNA ranged from 222 bp to 1106 bp with a total length of 15732 bp, in which exon sequences consisted of 10184 bp (64.7%)

  • Phylogenetic analysis of the plastid fragments Phylogenetic relationships among species remained poorly resolved based on individual plastid sequences (File S5 in Supporting Information S1)

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Summary

Introduction

The genus Populus, distributed throughout the northern hemisphere from subtropical to boreal forests [1] and one of the most economically and ecologically important genera of forest trees [2], is well known for its rapid growth, profuse vegetative propagation, environmental stress tolerance and the numerous uses of its wood [3]. The relationships among sections as well as relationships within each section remain controversial and/or poorly resolved because of the extensive interspecific hybridization and high degree of morphological variation among species [3,5]. The combination of these two features results in a major disagreement in the number of species and their delimitation [5,6].

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