Abstract

All members of the Src family of nonreceptor protein tyrosine kinases are phosphorylated and subsequently down-regulated by the C-terminal Src kinase, Csk. Although the recognition of Src protein substrates is essential for a diverse set of signaling events linked to cellular growth and differentiation, the factors controlling this critical protein-protein interaction are not well known. To understand how Csk recognizes Src, the chemical/physical events that modulate apparent substrate affinity and turnover were investigated. Src is phosphorylated in a biphasic manner in rapid quench flow experiments, suggesting that the phosphoryl transfer step is fast and highly favorable and does not limit overall turnover. As opposed to other kinase-substrate pairs, turnover is not limited by the physical release of ADP based on stopped-flow fluorescence and catalytic trapping experiments, suggesting that other steps control net phosphorylation. The K(d) for Src is considerably larger than the K(m) based on single turnover kinetic and equilibrium sedimentation experiments. Taken together, the data are consistent with a mechanism whereby Csk achieves a low K(m) for the substrate Src, not by stabilizing protein-protein interactions but rather by facilitating a fast phosphoryl transfer step. In this manner, the phosphoryl transfer step functions as a chemical clamp facilitating substrate recognition.

Highlights

  • All members of the Src family of nonreceptor protein tyrosine kinases are phosphorylated and subsequently down-regulated by the C-terminal Src kinase, Csk

  • Could chemical clamping provide a general mechanism for substrate recognition within the protein kinase family? To examine this intriguing possibility, we studied the phosphorylation of Src by its principal regulator, Csk

  • The biomolecular interaction of Src family member nonreceptor protein tyrosine kinases with Csk is a regulatory event of fundamental importance in eukaryotic cells (30 –32)

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Summary

Introduction

All members of the Src family of nonreceptor protein tyrosine kinases are phosphorylated and subsequently down-regulated by the C-terminal Src kinase, Csk. Whereas the biomolecular interaction between protein kinases and their target substrates is fundamentally important in understanding communication cascades, there is currently no three-dimensional structure of a kinase with a full-length protein substrate bound Such a structure would be useful for determining how protein kinases use residue contacts both in and outside the active site to bind and phosphorylate proteins. A 20-residue peptide based on the C-terminal tail of Src is very poorly phosphorylated with a Km value that is ϳ100-fold larger than that for the full-length protein substrate [13]. Such observations suggest that docking regions beyond the perimeter of the Csk active site, such as those in helix ␣D, assist in the recognition of physiological protein substrates [11].

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