Abstract

Phosphorus (P) solubilization is an important process for P acquisition by plants and soil microbes in most temperate forests. The abundance of inorganic P solubilizing bacteria (PSB) is affected by the P concentration in the soil and the carbon input by plants. We used a girdling approach to investigate the interplay of root-derived C and initial P content on the community composition of gcd-harboring bacteria as an example of PSB, which produce gluconic acid. We hypothesized that gcd-harboring PSB communities from P-poor sites are more vulnerable to girdling, because of their lower diversity, and that a shift in gcd-harboring PSB communities by girdling is caused by a response of few, mostly oligotrophic, taxa. We used a high-throughput metabarcoding approach targeting the gcd gene, which codes for the quinoprotein glucose dehydrogenase, an enzyme involved in the solubilization of inorganic P. We compared the diversity of gcd-harboring PSB in the mineral topsoil from two temperate beech forests with contrasting P stocks, where girdling was applied and compared our data to the respective control plots with untreated young beech trees. At both sites, gcd-harboring PSB were dominated by Proteobacteria and Acidobacteria, however, with differences in relative abundance pattern on the higher phylogenetic levels. The P-poor site was characterized by a high relative abundance of Kaistia, whereas at the P-rich site, Dongia dominated the gcd-harboring bacterial communities. Girdling induced an increase in the relative abundance of Kaistia at the P-poor site, whereas other bacterial groups of the family Rhizobiaceae were reduced. At the P-rich site, major microbial responders differed between treatments and mostly Bradyrhizobium and Burkholderia were positively affected by girdling in contrast to uncultured Acidobacteria, where reduced relative abundance was found. Overall, these effects were consistent at different time points analyzed after the introduction of girdling. Our data demonstrate that plant-derived carbon influences community structure of gcd-harboring bacteria in temperate beech forest soils.

Highlights

  • The availability of phosphorus (P) in soil is essential for the growth of plants and the functioning of soil biomes

  • For the analysis of the diversity of gcd-harboring PSB, we used a molecular barcoding approach based on sequencing of the gcd gene

  • 2,515 amplicon sequence variants (ASVs) contained Open reading frames (ORFs) and 2,496 of them had a significant hit against the gcd-specific Hidden Markov Models (HMMs), confirming the validity of the applied method

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Summary

Introduction

The availability of phosphorus (P) in soil is essential for the growth of plants and the functioning of soil biomes. Microbial solubilization of inorganic P in soil promotes plant nutrition (Satyaprakash et al, 2017), the mitigation of drought stress (Shintu and Jayaram, 2015) and the recovery of soil P, e.g., after ecosystem restoration processes (Liang et al, 2020), and it is accomplished by several processes, like the release of protons or secretion of organic acids and siderophores (Sashidhar and Podile, 2010). As Gcd is a membrane bound enzyme, the oxidation of glucose directly leads to external acidification and subsequent solubilization of mineral bound inorganic P (Goldstein et al, 1993; Goldstein, 1995; Yang et al, 2017; Rasul et al, 2019), and can be considered as an important mechanisms for the solubilization of inorganic P Gram negative bacteria

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