Abstract

Unmodified single-stranded DNA has recently gained popularity for the templated synthesis of fluorescent noble metal nanoclusters (NCs). Bright, stable, and biocompatible clusters have been developed primarily through optimization of DNA sequence. However, DNA backbone modifications have not yet been investigated. In this work, phosphorothioate (PS) DNAs are evaluated in the synthesis of Au and Ag nanoclusters, and are employed to successfully template a novel emitter using T15 DNA at neutral pH. Mechanistic studies indicate a distinct UV-dependent formation mechanism that does not occur through the previously reported thymine N3. The positions of PS substitution have been optimized. This is the first reported use of a T15 template at physiological pH for AgNCs.

Highlights

  • The strong fluorescent intensity, relative stability, low toxicity and small size of noble metal nanoclusters make them an attractive replacement for organic fluorophores and semiconductor quantum dots in biological analysis, biological imaging and environmental monitoring [1,2,3,4,5,6]

  • We explore the effect of backbone phosphorothioate modifications

  • We have investigated the effect of PS-modified single-stranded DNA (ssDNA) templates in the synthesis of fluorescent gold and silver nanoclusters

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Summary

Introduction

The strong fluorescent intensity, relative stability, low toxicity and small size of noble metal nanoclusters make them an attractive replacement for organic fluorophores and semiconductor quantum dots in biological analysis, biological imaging and environmental monitoring [1,2,3,4,5,6]. These modified oligonucleotides have become popular for designing antisense nucleic acids with high nuclease resistance and lipid bi-layer permeability, as well as for elucidating metal binding sites and ribozyme mechanisms [7,8,9]. More recently it has been employed in the assembly and positioning of metallic nanoparticles, and semi-conductor quantum dots, as well as in the development of chemical biology probes [10,11,12,13,14]

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