Abstract
Next generation sequencing has uncovered several genes with associated mutations in hematologic malignancies that can serve as potential biomarkers of disease. Keeping abreast of these genes is therefore of paramount importance in the field of hematology. This review focuses on PHF6, a highly conserved epigenetic transcriptional regulator that is important for neurodevelopment and hematopoiesis. PHF6 serves as a tumor suppressor protein, with PHF6 mutations and deletions often implicated in the development of T-lymphoblastic leukemia and less frequently in acute myeloid leukemia and other myeloid neoplasms. PHF6 inactivation appears to be an early event in T-lymphoblastic leukemogenesis, requiring cooperating events, including NOTCH1 mutations or overexpression of TLX1 and TLX3 for full disease development. In contrast, PHF6 mutations tend to occur later in myeloid malignancies, are frequently accompanied by RUNX1 mutations, and are often associated with disease progression. Moreover, PHF6 appears to play a role in lineage plasticity within hematopoietic malignancies, with PHF6 mutations commonly present in mixed phenotype acute leukemias with a predilection for T-lineage marker expression. Due to conflicting data, the prognostic significance of PHF6 mutations remains unclear, with a subset of studies showing no significant difference in outcomes compared to malignancies with wild-type PHF6, and other studies showing inferior outcomes in certain patients with mutated PHF6. Future studies are necessary to elucidate the role PHF6 plays in development of T-lymphoblastic leukemia, progression of myeloid malignancies, and its overall prognostic significance in hematopoietic neoplasms.
Highlights
Plant homeodomain (PHD) finger proteins consist of a family of epigenetic regulators that bind to a variety of targets, including both post-translationally modified and unmodified histones [1]
Measuring the expression level of PHF6 showed decreased PHF6 levels in patients with mutations compared to M0, M1, and M2 acute myeloid leukemia (AML) subtypes with wild-type PHF6, again supporting a tumor suppressor role for PHF6 and providing at least some genetic context to the results found by Mousa et al above [53, 59]
This implicates PHF6 mutations as a potential prognostic marker to be used in intermediate-risk AML, it should be noted that this finding has not been replicated by others [24]
Summary
Plant homeodomain (PHD) finger proteins consist of a family of epigenetic regulators that bind to a variety of targets, including both post-translationally modified and unmodified histones [1]. Ectopic expression of TLX3 in PHF6-deleted mice facilitated early onset leukemia and a hTLX1;PHF6+/- zebrafish model demonstrated fully penetrant early-onset leukemia development, underscoring the role of cooperation between these mutations in leukemogenesis [10, 43]. Other associations include those with mutations in Xlinked genes, USP9X and MED1 as well as with IL7R-JAK pathway genes, WT1, PTPN2 deletions, and HOX11L2 overexpression [33, 34, 44, 46]. The PHF6/LMO2/TAL1/LDB/GATA2 complex was shown to bind at DNA segments associated with hematopoietic or lymphoid organ development, hematopoiesis, as well as T-cell activation and differentiation [48]. Further study is required to assess the true prognostic significance of PHF6 mutations in T-ALL
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