Abstract

Author SummaryMammalian genomes contain many forms of genetic variation. For example, some genome segments were shown to vary in their number of copies between individuals of the same species, i.e. there is a range of number of copies in the normal population instead of the usual two copies (one per chromosome). These genetic differences play an important role in determining the phenotype (the observable characteristics) of each individual. We do not know, however, if such influences are brought about solely through changes in the number of copies of the genomic segments (and of the genes that map within) or if the structural modification of the genome per se also plays a role in the outcome. We use mouse models with different number of copies of the same genomic region to show that rearrangements of the genetic materials can affect the phenotype independently of the dosage of the rearranged region.

Highlights

  • Copy number variation (CNV) of genomic segments among phenotypically normal human individuals was recently shown to be surprisingly frequent [1,2]

  • The functional impact of CNV of a given genomic interval remains unstudied at a genome-wide scale

  • A fourth strain (Df(11)17/Dp(11)17) obtained by mating the Dp(11)17/+ and Df(11)17/+ animals enables the generation of genomically balanced mice with two copies of that same CNV in cis, while they are in trans in +/+ animals

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Summary

Introduction

Copy number variation (CNV) of genomic segments among phenotypically normal human individuals was recently shown to be surprisingly frequent [1,2]. It covers a large proportion of the human genome and encompasses thousands of genes [3,4]. About 58,000 human CNVs from approximately 14,500 regions (CNVRs) have been identified to date (http://projects.tcag.ca/ variation/) They contribute to genetic variation and genome evolution [5,6,7,8] by modifying the expression of genes mapping within the CNV and in its flanks [9,10,11,12,13]. The Retinoic Acid Induced gene 1 (RAI1; GeneID: 10743) is thought to be the main

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