Abstract
Acute myeloid leukemia (AML), a common hematological cancer of myeloid lineage cells, generally exhibits poor prognosis in the clinic and demands new treatment options. Recently, direct sequencing of samples from human AMLs and pre-leukemic diseases has unveiled their mutational landscapes and significantly advanced the molecular understanding of AML pathogenesis. The newly identified recurrent mutations frequently “hit” genes encoding epigenetic modulators, a wide range of chromatin-modifying enzymes and regulatory factors involved in gene expression regulation, supporting aberration of chromatin structure and epigenetic modification as a main oncogenic mechanism and cancer-initiating event. Increasing body of evidence demonstrates that chromatin modification aberrations underlying the formation of blood cancer can be reversed by pharmacological targeting of the responsible epigenetic modulators, thus providing new mechanism-based treatment strategies. Here, we summarize recent advances in development of small-molecule inhibitors specific to chromatin factors and their potential applications in the treatment of genetically defined AMLs. These compounds selectively inhibit various subclasses of “epigenetic writers” (such as histone methyltransferases MLL/KMT2A, G9A/KMT1C, EZH2/KMT6A, DOT1L/KMT4, and PRMT1), “epigenetic readers” (such as BRD4 and plant homeodomain finger proteins), and “epigenetic erasers” (such as histone demethylases LSD1/KDM1A and JMJD2C/KDM4C). We also discuss about the molecular mechanisms underpinning therapeutic effect of these epigenetic compounds in AML and favor their potential usage for combinational therapy and treatment of pre-leukemia diseases.
Highlights
Epigenetic modifications, including DNA methylation and a myriad of post-translational modifications of the DNA-packaging histone proteins, represent a fundamental means for regulating gene expression and other DNA-templated processes [1,2,3,4]
Recent deep sequencing of human cancer patient samples has identified novel recurrent mutations in genes encoding a wide range of epigenetic modulators and even histones themselves [6,7,8,9]
Progression and characteristics of Acute myeloid leukemia (AML) were linked to several key pathways [10, 11], including inactivation of tumor suppressors [such as TP53 and Wilm’s Tumor-1 (WT1)], gain-of-function mutation of oncogenic kinases, and stem cell transcription factors (TFs) [such as rearrangement and/or overexpression of HOX cluster genes and their cofactors such as MEIS1 [12,13,14]], as well as inactivating mutation of differentiation-promoting TFs
Summary
Epigenetic modifications, including DNA methylation and a myriad of post-translational modifications of the DNA-packaging histone proteins, represent a fundamental means for regulating gene expression and other DNA-templated processes [1,2,3,4]. Among the various affected epigenetic pathway genes include the DNA (cytosine-5)-methyltransferase 3 A (DNMT3A, a DNA methylation “writer”), Tet Methylcytosine dioxygenase 2 (TET2, a DNA methylation “eraser” or demethylase), Enhancer of zeste homolog 2 [EZH2/KMT6A, a “writer” mediating methylation of histone H3, Lys (H3K27)], Additional Sex Combs Like 1 and 2 (ASXL1 and ASXL2, an EZH2-associated cofactor family), the Cohesin complex (SMC3-SMC1-RAD21-STAG) genes, and Isocitrate Dehydrogenase 1 and 2 (IDH1 and IDH2) These newly identified somatic mutations of DNA/chromatin modifiers and structural organizers are in agreement with previous karyotyping/FISH-based analyses of AML patients, which already identified recurrent chromosomal translocation or abnormality of genes encoding various members of epigenetic “writers” (MLL/ KMT2A, NSD1/KMT3B, NSD3/WHSC1L1/KMT3F) [27,28,29,30,31], “erasers” (JARID1A/KDM5A) [32, 33], and “readers” (PHF23) [32, 34]. A recent study reported that MLL2 represents a more relevant therapeutic target in a range of MLL-rearranged leukemia
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