Persistence Length, End-to-End Distance, and Structure of Coarse-Grained Polymers.

Abstract

Coarse-grained (CG) polymer simulations can access longer times and larger lengths than all-atom (AA) molecular dynamics simulations; however, not all CG models correctly reproduce polymer properties on all length scales. Here we coarse-grain atomistic position data from polyethylene (PE) and polytetrafluoroethylene (PTFE) melt simulations by combining λ backbone carbon atoms in a single CG bead. Resulting CG variables have correlations along the chain backbone that depend on the coarse-graining scale λ and are generally not reproduced by independent bond-length, bond-angle and torsion-angle distributions. By constructing distributions of CG variables equivalent to those from simulated CG potentials we are able to evaluate the bond-orientation correlation for different CG models at reduced computational cost. CG models and potentials that include only nonbonded, bond-length, and bond-angle interactions computed by Boltzmann inversion correctly reproduce the CG variable distributions but do not necessarily reproduce the chain stiffness, overestimating the persistence length Lp and end-to-end distance ⟨ R2⟩1/2 with increasing λ. While CG models that include an independent torsion angle match the bond-orientation correlation and ⟨ R2⟩1/2 better, only approximate models that include correlations between bond and torsion angles match the true bond-orientation correlation.