Abstract

Mallard ducks are a natural host and reservoir of avian Influenza A viruses. While most influenza strains can replicate in mallards, the virus typically does not cause substantial disease in this host. Mallards are often resistant to disease caused by highly pathogenic avian influenza viruses, while the same strains can cause severe infection in humans, chickens, and even other species of ducks, resulting in systemic spread of the virus and even death. The differences in influenza detection and antiviral effectors responsible for limiting damage in the mallards are largely unknown. Domestic mallards have an early and robust innate response to infection that seems to limit replication and clear highly pathogenic strains. The regulation and timing of the response to influenza also seems to circumvent damage done by a prolonged or dysregulated immune response. Rapid initiation of innate immune responses depends on viral recognition by pattern recognition receptors (PRRs) expressed in tissues where the virus replicates. RIG-like receptors (RLRs), Toll-like receptors (TLRs), and Nod-like receptors (NLRs) are all important influenza sensors in mammals during infection. Ducks utilize many of the same PRRs to detect influenza, namely RIG-I, TLR7, and TLR3 and their downstream adaptors. Ducks also express many of the same signal transduction proteins including TBK1, TRIF, and TRAF3. Some antiviral effectors expressed downstream of these signaling pathways inhibit influenza replication in ducks. In this review, we summarize the recent advances in our understanding of influenza recognition and response through duck PRRs and their adaptors. We compare basal tissue expression and regulation of these signaling components in birds, to better understand what contributes to influenza resistance in the duck.

Highlights

  • Influenza A virus (IAV) is a negative sense single stranded RNA (-ssRNA) virus which causes significant disease in both humans and animals

  • We are unaware of studies looking at Tripartite motif protein 25 (TRIM25) basal tissue expression in duck, we showed TRIM25 is upregulated in the lung of HPAI infected ducks and slightly upregulated in lung of LPAI infected ducks at 1 DPI (Fleming-Canepa et al, 2019)

  • Duck retinoic acid-inducible gene-I (RIG-I) and melanoma differentiationassociated gene 5 (MDA5) are most highly expressed in the trachea, lung and intestines, areas of both HPAI and LPAI influenza replication (Figure 2A)

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Summary

INTRODUCTION

Influenza A virus (IAV) is a negative sense single stranded RNA (-ssRNA) virus which causes significant disease in both humans and animals. We compile recent studies on characterization of these influenza sensors, signaling pathways and their downstream effectors in both chickens and ducks Basal expression of these PRRs may allow different tissues to detect IAV infection earlier. MDA5 was often thought to be of less importance in IAV infection because of its preference for longer dsRNA, siRNA knockdown of this host mRNA during IAV infection in mice demonstrated that MDA5 is an important factor in viral restriction (Benitez et al, 2015) While it appears that chickens have lost RIG-I (Barber et al, 2010), they use the related cytosolic receptor MDA5 to detect IAV and signal through MAVS to induce IFN and proinflammatory cytokine responses (Karpala et al, 2011; Liniger et al, 2012). The upregulation of IFITM2 during IAV infection is most likely due to interferon stimulation and is not virus specific

A NOTE ON MISSING GENES AND DARK DNA
CONCLUSIONS
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