Abstract

The expression of non–coding RNAs (ncRNAs) is dysregulated in human cancers. The transcribed ultraconserved regions (T-UCRs) express long ncRNAs involved in human carcinogenesis. T-UCRs are non-coding genomic sequence that are 100% conserved across humans, rats and mice. Conservation of genomic sequences across species intrinsically implies an essential functional role and so we considered the expression of T-UCRs in lung cancer. Using a custom microarray we analyzed the global expression of T-UCRs. Among these T-UCRs, the greatest variation was observed for antisense ultraconserved element 83 (uc.83-), which was upregulated in human lung cancer tissues compared with adjacent non cancerous tissues. Even though uc.83- is located within the long intergenic non-protein coding RNA 1876 (LINC01876) gene, we found that the transcribed uc.83- is expressed independently of LINC01876 and was cloned as a 1143-bp RNA gene. In this study, functional analysis confirmed important effects of uc.83- on genes involved in cell growth of human cells. siRNA against uc.83- decreased the growth of lung cancer cells while the upregulation through a vector overexpressing the uc.83- RNA increased cell proliferation. We also show the oncogenic function of uc.83- is mediated by the phosphorylation of AKT and ERK 1/2, two important biomarkers of lung cancer cell proliferation. Based on our findings, inhibition against uc.83- could be a future therapeutic treatment for NSCLC to achieve simultaneous blockade of pathways involved in lung carcinogenesis.

Highlights

  • Non-small-cell lung cancer (NSCLC) is the prevalent form of lung cancer with a 5-year survival of ~15% [1]

  • We have previously shown that transcribed ultraconserved regions (T-ultraconserved regions (UCRs)) are aberrantly expressed in lung cancer and in particular we discovered that transcribed uc.339 is overexpressed in NSCLC cells causing an increase of cell proliferation [14]

  • We have contributed to some of the seminal discoveries showing the involvement of T-UCRs in human carcinogenesis [12, 14, 15]

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Summary

Introduction

Non-small-cell lung cancer (NSCLC) is the prevalent form of lung cancer with a 5-year survival of ~15% [1]. Dysregulation of T-UCRs is observed in several types of hematological and solid tumors, compared to the normal tissue counterpart and are often situated at cancer-associated genomic regions [7,8,9,10]. It was demonstrated (including contributions by our group) that uc.73A is a oncogene T-UCR in colorectal cancer (CRC) cell lines and other groups showed uc.338 and uc.73A as oncogenes in hepatocellular carcinoma (HCC) and CRC, respectively [11, 12]. Our findings confirm an oncogenic function for uc.83- in lung cancer

Materials and methods
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