Organic and inorganic fertilizers respectively drive bacterial and fungal community compositions in a fluvo-aquic soil in northern China

Abstract

Soil microbes play vital roles in energy flow and nutrient cycling and, thus, are important for agricultural production. A better understanding of the complex responses of microbial communities to various organic and inorganic fertilization regimes is critical for sustainable development of agroecosystems. Changes in bacterial and fungal abundance and diversity in fluvo-aquic soil in Northern China were studied under 38-year long-term fertilization strategies: four chemical-fertilization strategies (i.e., no fertilizer, N, NP, or NPK), with or without manure amendment, were investigated by high-throughput sequencing and quantitative polymerase chain reaction-based amplification of bacterial 16S rRNA and fungal internal transcribed spacer (ITS) rRNA genes. Chemical fertilizer plus manure addition clearly increased the soil fertility and was recommended for further optimization of fertilization patterns. Both principal component analysis and partial least-square discriminant analysis showed greater impacts of manure addition than chemical fertilizer on bacterial community distributions, whereas fungal communities were more sensitive to inorganic fertilizer. The linear discriminant analysis effect size method revealed that the number of responding microbes (microbes significantly affected by various fertilizations) in bacterial communities in manure-treated soils was markedly higher than that in chemical fertilizer-treated soils, whereas those of fungal communities showed the opposite trend. In addition, redundancy analysis further illustrated the primary importance of organic matter in shaping community distributions of bacteria, rather than in driving fungal community patterns. These results suggested that organic and inorganic fertilizers, respectively, dominated in shaping bacterial and fungal community distributions in fluvo-aquic soils.