Abstract

Two-photon excitation fluorescence microscopy has revolutionized our understanding of brain structure and function through the high resolution and large penetration depth it offers. Investigating neural structures in vivo requires gaining optical access to the brain, which is typically achieved by replacing a part of the skull with one or several layers of cover glass windows. To compensate for the spherical aberrations caused by the presence of these layers of glass, collar-correction objectives are typically used. However, the efficiency of this correction has been shown to depend significantly on the tilt angle between the glass window surface and the optical axis of the imaging system. Here, we first expand these observations and characterize the effect of the tilt angle on the collected fluorescence signal with thicker windows (double cover slide) and compare these results with an objective devoid of collar-correction. Second, we present a simple optical alignment device designed to rapidly minimize the tilt angle in vivo and align the optical axis of the microscope perpendicularly to the glass window to an angle below 0.25°, thereby significantly improving the imaging quality. Finally, we describe a tilt-correction procedure for users in an in vivo setting, enabling the accurate alignment with a resolution of <0.2° in only few iterations.

Highlights

  • Since its description for biological applications [1], two-photon excitation fluorescence microscopy (TPEF) has become a widespread tool for biomedical research

  • One of the most common applications of TPEF microscopy is the study of brain cells in vivo, which has led to a better understanding of neurobiological processes ranging from the level of single channel dynamics to the large scale functional organization of cortical circuits [8]

  • We have previously demonstrated the deleterious effect of sample tilt on imaging quality under a cranial window made of a single layer of cover glass [18]

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Summary

Introduction

Since its description for biological applications [1], two-photon excitation fluorescence microscopy (TPEF) has become a widespread tool for biomedical research. One of the most common applications of TPEF microscopy is the study of brain cells in vivo, which has led to a better understanding of neurobiological processes ranging from the level of single channel dynamics to the large scale functional organization of cortical circuits [8]. Optical access to the brain is typically granted through a craniotomy where the bone is replaced with a glass window. This method allows stable long-term imaging of the same area up to several months, which is essential for elucidating anatomical and functional changes induced by learning or development [9]

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