Abstract
AbstractCurrent projects in Systems Biology often produce a multitude of different high-throughput data sets that need to be managed, processed, and analyzed in an integrated fashion. In this paper, we present the OmixAnalyzer, a web-based tool for management and analysis of heterogeneous omics data sets. It currently supports gene microarrays, miRNAs, and exon-arrays; support for mass spectrometry-based proteomics is on the way, and further types can easily be added due to its plug-and-play architecture. Distinct from competitor systems, the OmixAnalyzer supports management, analysis, and visualization of data sets; it features a mature system of access rights, handles heterogeneous data sets including metadata, supports various import and export formats, includes pipelines for performing all steps of data analysis from normalization and quality control to differential analysis, clustering and functional enrichment, and it is capable of producing high quality figures and reports. The system builds only on open source software and is available on request as sources or as a ready-to-run software image. An instance of the tool is available for testing at omixanalyzer.informatik.hu-berlin.de.KeywordsData LayerGene ChipVirtual Machine ImageExport FormatInstallation GuideThese keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.
Talk to us
Join us for a 30 min session where you can share your feedback and ask us any queries you have
Schedule a callDisclaimer: All third-party content on this website/platform is and will remain the property of their respective owners and is provided on "as is" basis without any warranties, express or implied. Use of third-party content does not indicate any affiliation, sponsorship with or endorsement by them. Any references to third-party content is to identify the corresponding services and shall be considered fair use under The CopyrightLaw.
