Abstract

Antibiotic resistant bacteria and genes which confer resistance to antibiotics from human/animal sources are currently considered a serious environmental and a public health concern. This problem is still little investigated in aquatic environment of developing countries according to the different climatic conditions. In this research, the total bacterial load, the abundance of relevant bacteria (Escherichia coli (E. coli), Enterococcus (Ent), and Pseudomonas), and antibiotic resistance genes (ARGs: blaOXA-48, blaCTX-M, sul1, sul2, sul3, and tet(B)) were quantified using Quantitative Polymerase Chain Reaction (qPCR) in sediments from two rivers receiving animal farming wastewaters under tropical conditions in Kinshasa, capital city of the Democratic Republic of the Congo. Human and pig host-specific markers were exploited to examine the sources of contamination. The total bacterial load correlated with relevant bacteria and genes blaOXA-48, sul3, and tet(B) (P value < 0.01). E. coli strongly correlated with 16s rDNA, Enterococcus, Pseudomonas spp., blaOXA-48, sul3, and tet(B) (P value < 0.01) and with blaCTX-M, sul1, and sul2 at a lower magnitude (P value < 0.05). The most abundant and most commonly detected ARGs were sul1, and sul2. Our findings confirmed at least two sources of contamination originating from pigs and anthropogenic activities and that animal farm wastewaters didn’t exclusively contribute to antibiotic resistance profile. Moreover, our analysis sheds the light on developing countries where less than adequate infrastructure or lack of it adds to the complexity of antibiotic resistance proliferation with potential risks to the human exposure and aquatic living organisms. This research presents useful tools for the evaluation of emerging microbial contaminants in aquatic ecosystems which can be applied in the similar environment.

Highlights

  • The global consumption of antibiotics between 2000 and 2015 has increased by approximately by 69%; that’s more than 4% increase annually

  • Sediments have been identified as reservoir of faecal indicator bacteria (FIB) and ARGs26–28 in aquatic environment according to the different climatic conditions

  • In this study, we aimed to investigate the occurrence of antibiotic resistance genes (ARGs) and relevant bacteria marker genes in two different river systems in Kinshasa, Democratic Republic of Congo which are receiving effluent from animal farms to assess the contribution of the farms in the dissemination of antibiotic resistance

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Summary

Introduction

The global consumption of antibiotics between 2000 and 2015 has increased by approximately by 69%; that’s more than 4% increase annually. ARGs were found to remain detectable via molecular methods in the effluents from urban and hospital wastewater treatment plants[7,9] The release of such contamination into the environment presents a great risk to the public health[10,11,12,13]. The untreated/partial treated wastewater treatment plants (WWTP), urban, hospital, animal farms and industrial effluent waters can be considered as the main sources contributing to the dissemination of emerging contaminants (such as heavy metals, pathogens, ARGs, nutrients) into the aquatic environment. In this study, we aimed to investigate the occurrence of ARGs and relevant bacteria marker genes in two different river systems in Kinshasa, Democratic Republic of Congo which are receiving effluent from animal farms to assess the contribution of the farms in the dissemination of antibiotic resistance. To the best of our knowledge, this is the first study on the impact of animal farming on the propagation of ARGs and relevant bacteria in a central African region and in the city of Kinshasa, the capital of the Democratic Republic of the Congo

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