Occurrence and characterisation of Eustrongylides species in Australian native birds and fish

Early ontogeny-related changes of the fatty acid composition in the Percichthyid fishes trout cod, Maccullochella macquariensis and Murray cod, M. peelii peelii

Rates of hybridization and introgression are increasing dramatically worldwide because of translocations, restocking of organisms and habitat modifications; thus, determining whether hybridization is occuring after reintroducing extirpated congeneric species is commensurately important for conservation. Restocking programs are sometimes criticized because of the genetic consequences of hatchery-bred fish breeding with wild populations. These concerns are important to conservation restocking programs, including those from the Australian freshwater fish family, Percichthyidae. Two of the better known Australian Percichthyidae are the Murray Cod, Maccullochella peelii and Trout Cod, Maccullochella macquariensis which were formerly widespread over the Murray Darling Basin. In much of the Murrumbidgee River, Trout Cod and Murray Cod were sympatric until the late 1970s when Trout Cod were extirpated. Here we use genetic single nucleotide polymorphism (SNP) data together with mitochondrial sequences to examine hybridization and introgression between Murray Cod and Trout Cod in the upper Murrumbidgee River and consider implications for restocking programs. We have confirmed restocked riverine Trout Cod reproducing, but only as inter-specific matings, in the wild. We detected hybrid Trout Cod–Murray Cod in the Upper Murrumbidgee, recording the first hybrid larvae in the wild. Although hybrid larvae, juveniles and adults have been recorded in hatcheries and impoundments, and hybrid adults have been recorded in rivers previously, this is the first time fertile F1 have been recorded in a wild riverine population. The F1 backcrosses with Murray cod have also been found to be fertile. All backcrosses noted were with pure Murray Cod. Such introgression has not been recorded previously in these two species, and the imbalance in hybridization direction may have important implications for restocking programs.

The Australian freshwater cod genus, Maccullochella is represented by three species: Murray cod, M. peelii peelii, eastern freshwater cod, M. ikei, and trout cod, M.macquariensis. Seven novel microsatellite loci from M. ikei and six previously published loci from M. peelii peelii were tested on wild populations of Murray, eastern and trout cod. Levels of polymorphism varied between species with 13 loci polymorphic in Murray cod, 9 in trout cod and 7 in eastern cod. Observed heterozygosities ranged from 0.053 to 0.842. This suite of microsatellite loci will facilitate future studies of the genetic status of wild and hatchery bred populations of Maccullochella.

Rates of hybridization and introgression are increasing dramatically worldwide because of translocations, restocking of organisms and habitat modifications (Allendorf et al., 2001) thus determining whether hybridization is beneficial or detrimental for the species involved is commensurately important for conservation. Restocking programs are sometimes criticized because of the genetic consequences of hatchery-bred fish breeding with wild populations. These concerns are important to conservation restocking programs, including Percichthyidae. Two of the better known Australian Percichthyidae are the Murray Cod (Maccullochella peelii) and Trout Cod (Maccullochella macquariensis) which were formerly widespread over the Murray Darling Basin. In much of the Murrumbidgee River Trout Cod and Murray Cod were sympatric until the late 1970s when Trout Cod were extirpated. Here we use genetic SNP data to examine hybridization and introgression between Murray Cod and Trout Cod in the upper Murrumbidgee River and consider implications for restocking programs. For the first time we have confirmed restocked riverine Trout Cod as reproducing in the wild. We detected hybrid Trout Cod-Murray Cod in the Upper Murrumbidgee, recording the first hybrid larvae in the wild. Although hybrid larvae, juveniles and adults have been recorded in hatcheries and impoundments, and hybrid adults have been recorded in rivers previously (Douglas, Gooley & Ingram, 1994a; Douglas et al., 1995) , this is the first time fertile F1 have been recorded in the wild. The F1 backcrosses with Murray cod have also been found to be fertile. All backcrosses noted were with pure Murray Cod. Such introgression has not been recorded previously in these two species, and the imbalance in hybridization direction may have important implications for restocking programs.

The amino acid profiles in developing eggs and larvae of the freshwater Percichthyid fishes, trout cod, Maccullochella macquariensis and Murray cod, Maccullochella peelii peelii

Diet composition and preference of juvenile Murray cod, trout cod and Macquarie perch (Percichthyidae) reared in fertilised earthen ponds

The environmental conditions and timing of spawning of Murray cod and trout cod were investigated over three successive years in the regulated Murray River and in the nearby, unregulated Ovens River. Larvae were collected in drift samples from early November. Murray cod larvae were present for up to ten weeks, but trout cod larvae were present for only about two weeks. Cod larvae were collected in both rivers in each year sampled, despite a range of flow conditions. Spawning periods, estimated by back‐calculating larval ages and egg incubation times, were in part, concurrent for the two species, beginning in October when water temperatures had exceeded 15°C, allowing the occasional hybridization that has been noted between these two species. Trout cod larvae (10.0–18.2 mm) were significantly larger than Murray cod larvae (9.5–14.8 mm) in both years and the larvae of both species were significantly larger in 1995/6 than in 1994/5 in the Murray River. There was no relationship between larval size and water temperature, but later spawning times at the upper Murray River site coincided with lower water temperatures. Larval abundance varied significantly between sites, samples and years, with peak larval abundances occurring in November. Murray cod larval abundance was best explained by the explanatory variables of year, day length and change in flow over the previous 7 d. Environmental conditions for the spawning of Murray cod and trout cod are similar, and both species exhibit a similar larval dispersal strategy by emergence into the drift. Spawning occurred regularly under a range of flow conditions and it is likely that recruitment of these species in these rivers is driven by the subsequent survival of larvae and juveniles. Copyright © 2005 John Wiley & Sons, Ltd.

Conservation strategies for endangered species often include protection from harvest by humans. Correct species identification is paramount for this form of management to be effective. Trout cod (Maccullochella macquariensis) is a threatened Australian freshwater fish, occupying habitats in the southern Murray–Darling basin. Trout cod, although protected from angling, morphologically resemble Murray cod (Maccullochella peelii), a species that is a key target of recreational anglers. During a long‐term mark–recapture study, angler return data were collected both for Murray cod and trout cod. Up to 40% of trout cod captured were identified by anglers as Murray cod, and the chance of misidentification increased with the increasing size of trout cod, implying that this species could be inadvertently retained by anglers. Moreover, unnecessary angling mortality of adult breeding individuals is likely to delay the time for recovery of this threatened species. As a large and vocal user group, anglers can play a key role in promoting the conservation of aquatic areas and fish species. There is a need for anglers and fishery managers to understand this problem and to work together on a solution, through the tighter enforcement of regulations where trout cod are present, and through an increased emphasis on education.

Hybridization is confirmed between two wild, naturally sympatric populations of Murray cod, Maccullochella peelii peelii, and trout cod, M. macquariensis, from the Murray River, Australia. Electrophoretic comparisons of proteins in muscle and liver tissues from trout cod, Murray cod, an artificially produced hybrid of Murray cod and trout cod, and putative wild hybrids from the Murray River indicated that the last group were first-generation interspecific hybrids. This is the first record of hybridization between naturally occumng populations of these two species. Naturally occurring wild populations of both trout cod and Murray cod are nonetheless genetically distinct and there is no evidence of introgression between the species. These findings have some implications for management policies and practices in relation to both species, and these are discussed.

The present radio-tracking study compared adult daytime microhabitat use by three large Australian native freshwater fishes (Murray cod, Maccullochella peelii, trout cod, M. macquariensis, golden perch, Maquaria ambigua) and introduced carp, Cyprinus carpio, in the Murray River, south-eastern Australia. The paper describes habitat patches used by all species and quantifies differences among species. All species were strongly associated with structural woody habitat (>68% cover), deeper (>2.4 m), slower water (<0.2 m s–1) closer to the river bank, with variations in substrate. Murray cod and trout cod used deeper habitats (2.8 m and 2.9 m, respectively), with higher surface water velocities (0.37 m s–1 and 0.49 m s–1, respectively) and further from the bank than the habitats of golden perch (2.6 m; 0.31 m s–1) or carp (2.4 m; 0.20 m s–1), the latter species using wood higher in the water column than did cod species. Trout cod used habitats furthest from the bank and carp those closest. These data provide support and direction for reintroduction of structural woody habitat patches for rehabilitation which, in general, should have >70% cover, be >1.5 m high, located <15% of the river channel (width) closest to the bank, with surface water velocities of 0.3–0.6 m s–1.

Understanding how and why the size of populations varies is critical knowledge for conservation and management. While considerable work has explored how different demographic parameters affect population growth, less is known the drivers of variability in these parameters. Long-term time series tracking population size that are coupled with empirical data to examine the relative importance of different drivers are rare, especially in freshwater systems. Even rarer are studies that collect this information concurrently from multiple species with contrasting life history strategies in the same system to assess whether population size and the relative importance of drivers also vary. We studied changes in the abundance and size structure of four native freshwater fish species in the Murray River, southeastern Australia, over a continuous 19-yr period. Two species with traits typical of "equilibrium" species (Murray cod Maccullochella peelii and trout cod Maccullochella macquariensis) and two with traits of "periodic" species (golden perch Macquaria ambigua and silver perch Bidyanus bidyanus) were sampled annually and capture-mark-recapture modeling was used to ask (1) how did population size change during this period, (2) how were changes in population size related to variability in hydrology, and (3) how were changes in population size driven by different processes (local recruitment or migration events)? Populations of all four species varied throughout the study, and our results are consistent with the notion that local recruitment is an important driver of this variability for Murray cod and trout cod, whereas immigration is more important for the two other species. Increases in spring river discharge strongly influenced these responses for trout cod and golden perch. Our study provides fundamental insights into the population dynamics of these valued species, and how management strategies might differ based on their life histories. Management should focus on allowing connectivity for golden and silver perch, and on promoting local scale recruitment and survival for Murray cod and trout cod. More generally, our study highlights the importance of understanding the processes underpinning population persistence, how these processes may vary for different species, and ultimately how this knowledge can inform targeted management actions.

Experimental transmission and virulence of a megalocytivirus (Family Iridoviridae) of dwarf gourami ( Colisa lalia) from Asia in Murray cod ( Maccullochella peelii peelii) in Australia

Abstract. Intestinal parasitism by the coccidian Goussia lomi was associated with morbidity and histological lesions in aquarium‐reared Murray cod fry, Maccullochella peeli (Mitchell), at a hatchery near Narrandera, New South Wales, Australia. Coccidial infection was not found in pond‐reared Murray cod of the same age, nor in trout cod, M. macquariensis (Cuvier & Valenciennes), reared under similar conditions at the same hatchery. Overcrowding may have predisposed Murray cod in aquaria to heavy infection with G. lomi. Clinical coccidiosis was expressed in a small proportion of infected fish. Large numbers of coccidial developmental forms were detected histologically in the intestinal mucosa of affected fish in association with a necrotic enteropathy. Using a method of intestinal trypsin digestion and flotation, 2000 coccidial oocysts were counted in one 0‐05g fish.

Many freshwater fish worldwide have been shown to use Structural Woody Habitat (SWH) for a variety of reasons. The mid reaches of the Murray River, a large lowland river in south-eastern Australia, was surveyed by boat electrofishing, to investigate the use of SWH type (hollows, rootmass and solids), SWH distance to bank (near bank, intermediate to bank and mid-channel) and the interaction between SWH type and distance to bank. The study found that Murray cod catch per unit effort (CPUE) increased in near-bank areas when hollows were a component of the SWH. The CPUE of trout cod was higher when hollows were present. However, the interactions between distance to bank and hollow SWH were complex and dependent on presence or absence of rootmass. The species-specific interactions between SWH microhabitat and distance to bank found within this study has important relevance for stream managers. The common practice of realigning SWH favours Murray cod over trout cod, which could have negative consequences for the endangered trout cod. More broadly, managers may need to consider a balance of SWH type and where it is placed in the river for the species they are targeting when rehabilitating rivers via the introduction of SWH.

Genetic variation is critical to the persistence of populations and their capacity to adapt to environmental change. The distribution of genetic variation across a species' range can reveal critical information that is not necessarily represented in species occurrence or abundance patterns. We identified environmental factors associated with the amount of intraspecific, individual-based genetic variation across the range of a widespread freshwater fish species, the Murray cod Maccullochella peelii. We used two different approaches to statistically quantify the relative importance of predictor variables, allowing for nonlinear relationships: a random forest model and a Bayesian approach. The latter also accounted for population history. Both approaches identified associations between homozygosity by locus and both disturbance to the natural flow regime and mean annual flow. Homozygosity by locus was negatively associated with disturbance to the natural flow regime, suggesting that river reaches with more disturbed flow regimes may support larger, more genetically diverse populations. Our findings are consistent with the hypothesis that artificially induced perennial flows in regulated channels may provide greater and more consistent habitat and reduce the frequency of population bottlenecks that can occur frequently under the highly variable and unpredictable natural flow regime of the system. Although extensive river regulation across eastern Australia has not had an overall positive effect on Murray cod numbers over the past century, regulation may not represent the primary threat to Murray cod survival. Instead, pressures other than flow regulation may be more critical to the persistence of Murray cod (for example, reduced frequency of large floods, overfishing and chemical pollution).