Nucleotide Binding Modes in a Motor Protein Revealed by 31 P- and 1 H-Detected MAS Solid-State NMR Spectroscopy.

Abstract

Protein–nucleic acid interactions play important roles not only in energy‐providing reactions, such as ATP hydrolysis, but also in reading, extending, packaging, or repairing genomes. Although they can often be analyzed in detail with X‐ray crystallography, complementary methods are needed to visualize them in complexes, which are not crystalline. Here, we show how solid‐state NMR spectroscopy can detect and classify protein–nucleic interactions through site‐specific 1H‐ and 31P‐detected spectroscopic methods. The sensitivity of 1H chemical‐shift values on noncovalent interactions involved in these molecular recognition processes is exploited allowing us to probe directly the chemical bonding state, an information, which is not directly accessible from an X‐ray structure. We show that these methods can characterize interactions in easy‐to‐prepare sediments of the 708 kDa dodecameric DnaB helicase in complex with ADP:AlF4 −:DNA, and this despite the very challenging size of the complex.