Abstract
BackgroundAroma, berry firmness and berry shape are three main quality traits in table grape production, and also the important target traits in grapevine breeding. However, the information about their genetic mechanisms is limited, which results in low accuracy and efficiency of quality breeding in grapevine. Mapping and isolation of quantitative trait locus (QTLs) based on the construction of genetic linkage map is a powerful approach to decipher the genetic determinants of complex quantitative traits.ResultsIn the present work, a final integrated map consisting of 3411 SLAF markers on 19 linkage groups (LGs) with an average distance of 0.98 cM between adjacent markers was generated using the specific length amplified fragment sequencing (SLAF-seq) technique. A total of 9 significant stable QTLs for Muscat flavor, berry firmness and berry shape were identified on two linkage groups among the hybrids analyzed over three consecutive years from 2016 to 2018. Notably, new stable QTLs for berry firmness and berry shape were found on LG 8 respectively for the first time. Based on biological function and expression profiles of candidate genes in the major QTL regions, 3 genes (VIT_08s0007g00440, VIT_08s0040g02740 and VIT_08s0040g02350) related to berry firmness and 3 genes (VIT_08s0032g01110, VIT_08s0032g01150 and VIT_08s0105g00200) linked to berry shape were highlighted. Overexpression of VIT_08s0032g01110 in transgenic Arabidopsis plants caused the change of pod shape.ConclusionsA new high-density genetic map with total 3411 markers was constructed with SLAF-seq technique, and thus enabled the detection of narrow interval QTLs for relevant traits in grapevine. VIT_08s0007g00440, VIT_08s0040g02740 and VIT_08s0040g02350 were found to be related to berry firmness, while VIT_08s0032g01110, VIT_08s0032g01150 and VIT_08s0105g00200 were linked to berry shape.
Highlights
Aroma, berry firmness and berry shape are three main quality traits in table grape production, and the important target traits in grapevine breeding
A new high-density genetic map with total 3411 markers was constructed with Specific length amplified fragment (SLAF)-seq technique, and enabled the detection of narrow interval Quantitative trait locus (QTL) for relevant traits in grapevine
Phenotypic data analysis The phenotypic variation ranges of Muscat flavor (MF), berry firmness (BF) and berry shape index (ShI) for the two parents and the F1 progenies were presented in Table 1 and Supplementary Table 2
Summary
Berry firmness and berry shape are three main quality traits in table grape production, and the important target traits in grapevine breeding. One of the major objectives of grape breeding is to develop molecular markers related to traits of interest for genetic selection of Numerous QTLs for grapevine relevant traits, including berry weight and size [3,4,5,6], sweetness and acids [7, 8], seedlessness [4, 5, 9, 10], disease-resistance traits [11,12,13,14,15], and so on, have been mapped In this decade, consumers pay more and more attention on grape quality, the taste (flavor, texture and so on) and the appearance.
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