Novel copper-drugs bearing dipodal bis-mercaptobenzimidazoles: Synthesis, crystal structures, in vitro biological activities, DNA binding, DFT calculations and molecular docking

Abstract

Three novel copper(II) complexes, 1–3, bearing dipodal bis-mercaptobenzimidazole derivatives based on ortho-, meta- or para-xylene (L1, L2, and L3) were successfully prepared and characterized by using various spectral techniques, including elemental analysis, FT-IR, 1H NMR, and UV–Vis spectroscopy, LC-MS spectrometry and TGA. The analysis revealed that the ligand/metal molar ratio in all copper(II) complexes is 1:1 and the ligand coordinates as a neutral N-donor onto metal center. Additionally, the crystal structures of L1, L2, L3, and copper(II) complex 2 were determined using single crystal X-ray diffraction (SC-XRD) analysis. Copper(II) complexes 1–3 displayed significant stability at pH range of 4–10. The antibacterial effect of ligands and complexes was tested against both gram-negative (Escherichia coli, E. coli ATCC 25922 PTCC 1399) and gram-positive (Staphylococcus aureus, S. aureus ATCC 6538 PTCC 1112) bacterial strains. It should be noted that the complexes showed enhanced antibacterial activity (up to 99 %) when compared to their free ligands. The in vitro studies of all synthesized compounds consisted of testing them against the human colorectal carcinoma cancer cell line (HCT-116) using the MTT assay. The findings revealed that the copper(II) complexes exhibited lower CC50 values (CC50 ranging from 0.045 mM to 0.135 mM) compared to their corresponding ligands (CC50 ranging from 0.150 mM to 0.240 mM) and carboplatin (CC50 = 0.165 mM), indicating higher anticancer activity of the complexes. Additionally, DAPI staining and fluorescence spectroscopy (at three different temperatures) were performed to further examine the impact of complexes 1–3 on inducing apoptosis and to explore their interaction with DNA, respectively. The results revealed a dynamic quenching mechanism, with hydrophobic forces playing a dominant role in the binding process. The viscosity measurements indicated that all complexes could interact in a groove binding manner with DNA. Density functional theory (DFT) calculations were employed to support the structural and vibrational studies and to predict the chemical reactivity. Docking simulations were conducted to evaluate their behavior of the synthesized compounds towards DNA (PDB: 1BNA). These results suggested that various elements, including NH groups, imidazole rings, thioetheric sulfur atom and sulfate moieties of ligands and complexes, are involved in groove binding with DNA.