Abstract

Fluorescence lifetime imaging microscopy (FLIM) is a powerful imaging tool used to study the molecular environment of flurophores. In time domain FLIM, extracting lifetime from fluorophores signals entails fitting data to a decaying exponential distribution function. However, most existing techniques for this purpose need large amounts of photons at each pixel and a long computation time, thus making it difficult to obtain reliable inference in applications requiring either short acquisition or minimal computation time. In this work, we introduce a new nonparametric empirical Bayesian framework for FLIM data analysis (NEB-FLIM), leading to both improved pixel-wise lifetime estimation and a more robust and computationally efficient integral property inference. This framework is developed based on a newly proposed hierarchical statistical model for FLIM data and adopts a novel nonparametric maximum likelihood estimator to estimate the prior distribution. To demonstrate the merit of the proposed framework, we applied it on both simulated and real biological datasets and compared it with previous classical methods on these datasets.

Highlights

  • Fluorescence lifetime imaging microscopy (FLIM) is a widely used technique to reveal the changes in fluorophores’ local environments by measuring fluorophores’ lifetime [1,2]

  • To investigate and compare different types of cells/tissues, the typical analysis workflow for FLIM data follows a two-step procedure [3,4,5]: 1) pixel-wise lifetime recovery at each pixel: the lifetime of each component and component contribution are extracted from fluorescence signal by fitting data to a single/double decaying exponential distribution function [6,7,8,9]; 2) integral property inference: one or several summary statistics of each sample are calculated from all pixel-wise estimations of the previous step, e.g. the mean or standard deviation of lifetime or component contribution

  • We conduct numerical experiments to demonstrate the merits of our nonparametric empirical bayesian FLIM analysis framework (NEB-FLIM)

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Summary

Introduction

Fluorescence lifetime imaging microscopy (FLIM) is a widely used technique to reveal the changes in fluorophores’ local environments by measuring fluorophores’ lifetime [1,2]. One main obstacle for pixel-wise analysis is that it requires a large number of photons per pixel [19], resulting in long photon collection time, usually more than tens of seconds for the whole image. This time requirement for photon collection prohibits FLIM to be used for acquisition at higher speeds [20]. Global analysis might provide more robust estimation in low-photon regime, it brings irreversible bias for pixel-wise lifetime estimation due to neglect of spatial change in fluorescence lifetime. There is a need for more robust pixel-wise lifetime fitting algorithms that work for low-photon regimes

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