Abstract

Over the past two decades, nuclear magnetic resonance (NMR) has emerged as one of the three principal analytical techniques used in metabolomics (the other two being gas chromatography coupled to mass spectrometry (GC-MS) and liquid chromatography coupled with single-stage mass spectrometry (LC-MS)). The relative ease of sample preparation, the ability to quantify metabolite levels, the high level of experimental reproducibility, and the inherently nondestructive nature of NMR spectroscopy have made it the preferred platform for long-term or large-scale clinical metabolomic studies. These advantages, however, are often outweighed by the fact that most other analytical techniques, including both LC-MS and GC-MS, are inherently more sensitive than NMR, with lower limits of detection typically being 10 to 100 times better. This review is intended to introduce readers to the field of NMR-based metabolomics and to highlight both the advantages and disadvantages of NMR spectroscopy for metabolomic studies. It will also explore some of the unique strengths of NMR-based metabolomics, particularly with regard to isotope selection/detection, mixture deconvolution via 2D spectroscopy, automation, and the ability to noninvasively analyze native tissue specimens. Finally, this review will highlight a number of emerging NMR techniques and technologies that are being used to strengthen its utility and overcome its inherent limitations in metabolomic applications.

Highlights

  • Similar to all other -omic sciences, metabolomics is a technology-driven discipline

  • The primary analytical technologies used in metabolomics include liquid chromatography coupled with single-stage mass spectrometry (LC-MS) [1,2,3] or tandem mass spectrometry (LC-MS/MS) [4,5,6,7,8,9], gas chromatography coupled to mass spectrometry (GC-MS) [1,2,10,11], high or ultrahigh performance liquid chromatography coupled to UV or fluorescent detection (HPLC/UPLC) [12,13,14,15,16,17,18,19], and nuclear magnetic resonance (NMR) spectroscopy [20,21,22,23,24,25,26,27]

  • The advent of near total automation in the NMR workflow means that NMR-based metabolomics is becoming the preferred choice for many large-scale metabolomic studies

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Summary

Introduction

Similar to all other -omic sciences, metabolomics is a technology-driven discipline. It is constantly evolving and taking advantage of new developments in analytical chemistry, including analytical techniques, instrumentation, analytical software, statistical methods, or computational. This growth in the use of NMR for metabolomics reflects the fact that NMR has a number of unique advantages [29] over other metabolomic platforms such as LC-MS or GC-MS. NMR is highly automatable and exceptionally reproducible, making high-throughput [30], large-scale metabolomics studies much more feasible with NMR spectroscopy than with LC-MS or GC-MS. In addition to these strengths, NMR is amenable to detecting and characterizing compounds that are less tractable to LC-MS analysis such as sugars, organic acids, alcohols, polyols, and other highly polar compounds

Increasing
Annotated
C NMR Spectroscopy for Metabolomics
13 C experiments
Detection nearly200
Heteronuclear
NMR Databases and Software for Metabolite Identification
New NMR Methods in Metabolomics
Hyperpolarization Methods
Applications of DNP in Metabolomics
Fast NMR Methods
Pure-Shift NMR
LC-NMR and Other Hybrid NMR Approaches
New Developments with NMR Equipment
NMR Magnets
NMR Probes
Limitations of NMR in Metabolomics
Findings
Concluding Remarks and Future Prospects
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