Abstract

Background NKX2-3 is associated with inflammatory bowel disease (IBD). NKX2-3 is expressed in microvascular endothelial cells and the muscularis mucosa of the gastrointestinal tract. Human intestinal microvascular endothelial cells (HIMECs) are actively involved in the pathogenesis of IBD and IBD-associated microvascular dysfunction. To understand the cellular function of NKX2-3 and its potential role underlying IBD pathogenesis, we investigated the genes regulated by NKX2-3 in HIMEC using cDNA microarray.Methodology/Principal Findings NKX2-3 expression was suppressed by shRNA in two HIMEC lines and gene expression was profiled by cDNA microarray. Pathway Analysis was used to identify gene networks according to biological functions and associated pathways. Validation of microarray and genes expression in intestinal tissues was assessed by RT-PCR. NKX2-3 regulated genes are involved in immune and inflammatory response, cell proliferation and growth, metabolic process, and angiogenesis. Several inflammation and angiogenesis related signaling pathways that play important roles in IBD were regulated by NKX2-3, including endothelin-1 and VEGF-PI3K/AKT-eNOS. Expression levels of NKX2-3, VEGFA, PI3K, AKT, and eNOS are increased in intestinal tissues from IBD patients and expression levels of EDN1 are decreased in intestinal tissues from IBD patients. These results demonstrated the important roles of NKX2-3, VEGF, PI3K, AKT, eNOS, and EDN1 in IBD pathogenesis. Correlation analysis showed a positive correlation between mRNA expression of NKX2-3 and VEGFA and a negative correlation between mRNA expression of NKX2-3 and EDN1 in intestinal tissues from IBD patients.Conclusion/Relevance NKX2-3 may play an important role in IBD pathogenesis by regulating endothelin-1 and VEGF signaling in HIMECs.

Highlights

  • Crohn’s disease (CD) and ulcerative colitis (UC), the two main subtypes of inflammatory bowel disease (IBD), are chronic, relapsing inflammatory disorders of the gastrointestinal tract

  • Identification of genes regulated by NKX2-3 To analyze the effects of NKX2-3 knockdown on gene expression and identify genes with altered expression levels, cDNA microarray analysis was conducted with NKX2-3 knockdown and control cells from two Human intestinal microvascular endothelial cells (HIMECs)

  • The expression levels of 1746 genes were affected by NKX2-3 knockdown (935 down-regulated and 811 upregulated) in the HIMEC 21B cell line as compared to control, and 1603 genes were affected by NKX2-3 knockdown (741 downregulated and 862 up-regulated) in the HIMEC 432 cell line as compared to control

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Summary

Introduction

Crohn’s disease (CD) and ulcerative colitis (UC), the two main subtypes of inflammatory bowel disease (IBD), are chronic, relapsing inflammatory disorders of the gastrointestinal tract. NKX2-3 is a member of the Nkx family of homeodomain transcription factors that play critical roles in regulating tissuespecific gene expression essential for determining tissue differentiation, as well as the temporal and spatial patterns of development [4,5]. Analysis of NKX2-3-deficient mice has revealed a critical role for this homeobox transcription factor in spleen development and organization [9], and in establishing the correct environment for normal B cell development and T cell dependent immune response [10]. NKX2-3 is expressed in microvascular endothelial cells and the muscularis mucosa of the gastrointestinal tract. To understand the cellular function of NKX2-3 and its potential role underlying IBD pathogenesis, we investigated the genes regulated by NKX2-3 in HIMEC using cDNA microarray

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