Abstract

α-Galactosidases (EC 3.2.1.22) are retaining glycosidases that cleave terminal α-linked galactose residues from glycoconjugate substrates. α-Galactosidases take part in the turnover of cell wall-associated galactomannans in plants and in the lysosomal degradation of glycosphingolipids in animals. Deficiency of human α-galactosidase A (α-Gal A) causes Fabry disease (FD), a heritable, X-linked lysosomal storage disorder, characterized by accumulation of globotriaosylceramide (Gb3) and globotriaosylsphingosine (lyso-Gb3). Current management of FD involves enzyme-replacement therapy (ERT). An activity-based probe (ABP) covalently labeling the catalytic nucleophile of α-Gal A has been previously designed to study α-galactosidases for use in FD therapy. Here, we report that this ABP labels proteins in Nicotiana benthamiana leaf extracts, enabling the identification and biochemical characterization of an N. benthamiana α-galactosidase we name here A1.1 (gene accession ID GJZM-1660). The transiently overexpressed and purified enzyme was a monomer lacking N-glycans and was active toward 4-methylumbelliferyl-α-d-galactopyranoside substrate (Km = 0.17 mm) over a broad pH range. A1.1 structural analysis by X-ray crystallography revealed marked similarities with human α-Gal A, even including A1.1's ability to hydrolyze Gb3 and lyso-Gb3, which are not endogenous in plants. Of note, A1.1 uptake into FD fibroblasts reduced the elevated lyso-Gb3 levels in these cells, consistent with A1.1 delivery to lysosomes as revealed by confocal microscopy. The ease of production and the features of A1.1, such as stability over a broad pH range, combined with its capacity to degrade glycosphingolipid substrates, warrant further examination of its value as a potential therapeutic agent for ERT-based FD management.

Highlights

  • ␣-Galactosidases (EC 3.2.1.22) are retaining glycosidases that cleave terminal ␣-linked galactose residues from glycoconjugate substrates. ␣-Galactosidases take part in the turnover of cell wall–associated galactomannans in plants and in the lysosomal degradation of glycosphingolipids in animals

  • Dysfunction or absence of ␣-Gal A leads to Fabry disease (FD), an X-linked lysosomal disorder characterized by accumulation of glycosphingolipids with terminal galactosyl moieties in tissues and body fluids of FD patients [9, 20]

  • We here report on the outcome of the investigation, including a comparison of the plant ␣-galactosidase with the human enzyme, which is deficient in FD patients

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Summary

Edited by Wolfgang Peti

␣-Galactosidases (EC 3.2.1.22) are retaining glycosidases that cleave terminal ␣-linked galactose residues from glycoconjugate substrates. ␣-Galactosidases take part in the turnover of cell wall–associated galactomannans in plants and in the lysosomal degradation of glycosphingolipids in animals. Deficiency of human ␣-galactosidase A (␣-Gal A) causes Fabry disease (FD), a heritable, X-linked lysosomal storage disorder, characterized by accumulation of globotriaosylceramide (Gb3) and globotriaosylsphingosine (lyso-Gb3). Dysfunction or absence of ␣-Gal A leads to Fabry disease (FD), an X-linked lysosomal disorder characterized by accumulation of glycosphingolipids with terminal galactosyl moieties in tissues and body fluids of FD patients [9, 20]. Most male FD patients lack the ␣-Gal A protein and develop neutralizing antibodies against the therapeutic recombinant enzymes that might contribute to the noted poor responses to current treatments [24]. Novel chemical tools have been developed to study different retaining glycosidases, including ␣-galactosidases [33, 34] These activity-based probes (ABPs) are mechanism-based irreversible inhibitors functionalized with a bio-orthogonal tag such as a fluorophore or biotin. We here report on the outcome of the investigation, including a comparison of the plant ␣-galactosidase with the human enzyme, which is deficient in FD patients

Results
Purification fold
4MU substrates
Discussion
Experimental procedures
Patient materials
Isolation of apoplast proteins
MS acquisition
Enzyme purification
Protein determination
Enzymatic assays and determination of kinetic parameters
Activity toward lipid substrates
Crystallization conditions and data collection
Full Text
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