Abstract

Parasites of the phylum Apicomplexa are the causative agents of important diseases such as malaria, toxoplasmosis or cryptosporidiosis in humans, and babesiosis and coccidiosis in animals. Whereas the first human recombinant vaccine against malaria has been approved and recently recommended for wide administration by the WHO, most other zoonotic parasitic diseases lack of appropriate immunoprophylaxis. Sequencing technologies, bioinformatics, and statistics, have opened the “omics” era into apicomplexan parasites, which has led to the development of systems biology, a recent field that can significantly contribute to more rational design for new vaccines. The discovery of novel antigens by classical approaches is slow and limited to very few antigens identified and analyzed by each study. High throughput approaches based on the expansion of the “omics”, mainly genomics and transcriptomics have facilitated the functional annotation of the genome for many of these parasites, improving significantly the understanding of the parasite biology, interactions with the host, as well as virulence and host immune response. Developments in genetic manipulation in apicomplexan parasites have also contributed to the discovery of new potential vaccine targets. The present minireview does a comprehensive summary of advances in “omics”, CRISPR/Cas9 technologies, and in systems biology approaches applied to apicomplexan parasites of economic and zoonotic importance, highlighting their potential of the holistic view in vaccine development.

Highlights

  • Apicomplexans parasites are a major cause of disease in humans and animals worldwide

  • Besides all the progress made towards the control of human malaria disease, between 2010 and 2017 the incidence has only been reduced by an 18% [10]; and despite its importance in public health, there is only one vaccine approved by the European Medicines Agency against human malaria: Mosquirix (RTS,S– GlaxoSmithKline) [11, 12] that has recently been recommended by the World Health Organization (WHO) for its widespread use in children in subSaharian Africa and other regions with moderate to high risk of Plasmodium falciparum transmission [13]

  • Next-generation sequencing (NGS) technologies have recently been applied to many apicomplexan parasites

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Summary

INTRODUCTION

Apicomplexans parasites are a major cause of disease in humans and animals worldwide. Systems biology approaches allow positive/negative dynamic feedback in an iterative process (indicated with blue arrows), by combining the use of data generated by molecular biology and high-throughput technologies with computational biology and mathematical modeling, have enabled the study of host immune responses and host-parasite interactions that could lead to the discovery of novel vaccine targets. Next-generation technologies of gene editing such as CRISPR/Cas have contributed to this issue, moving forward gene functional studies, by knocking-out, repressing, activating, or tagging genes in species where it was not possible before by other methods This has enhanced and speed-up the understanding of the biology of these parasites, providing newly characterized genes as potential targets for vaccine development (Figure 1). By analyzing longitudinal peripheral blood transcriptome and immunogenicity data from

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