Abstract

As the proteomics field continues to expand, scientists are looking to integrate cross-disciplinary tools for studying protein structure, function, and interactions. Protein purification remains a key tool for many characterization studies. Calmodulin (CaM) is a calcium-binding messenger protein with over a hundred downstream binding partners, and is involved in a host of physiological processes, from learning and memory to immune and cardiac function. To facilitate biophysical studies of calmodulin, researchers have designed a site-specific labeling process for use in bioconjugation applications while maintaining high levels of protein activity. Here, we present a platform for selective conjugation of calmodulin directly from clarified cell lysates under bioorthogonal reaction conditions. Using a chemoenzymatically modified calmodulin, we employ popular click chemistry reactions for the conjugation of calmodulin to Sepharose resin, thereby streamlining a previously multi-step purification and conjugation process. We show that this “next-generation” calmodulin-Sepharose resin is not only easy to produce, but is also able to purify more calmodulin-binding proteins per volume of resin than traditional calmodulin-Sepharose resins. We expect these methods to be translatable to other proteins of interest and to other conjugation applications such as surface-based assays for the characterization of protein-protein interaction dynamics.

Highlights

  • Calmodulin is a highly conserved calcium (Ca2+) binding protein that plays a role in sensing the frequency and duration of Ca2+ second messenger signals responsible for intracellular and intercellular communication, as well as activating and facilitating various protein-protein interactions [1]

  • Purified 12-Azidododecanoic Acid (12-ADA) CaM at varying concentrations was incubated with dibenzocyclooctyne (DBCO) functionalized Sepharose resin to generate a series of 12-ADA CaM affinity resins

  • The generation of our generation CaM affinity resin consists of two primary steps as depicted schematically in Fig 6: first, CaM is engineered to carry an N-myristoyl transferase recognition peptide at its N-terminus and is co-expressed in E. coli with N-myristoyl

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Summary

Introduction

Calmodulin is a highly conserved calcium (Ca2+) binding protein that plays a role in sensing the frequency and duration of Ca2+ second messenger signals responsible for intracellular and intercellular communication, as well as activating and facilitating various protein-protein interactions [1]. Upon binding of Ca2+, CaM undergoes a conformational shift, which opens up several hydrophobic patches that facilitate binding to many downstream proteins (over 100 have been identified [2,3,4]). CaM mediates numerous calcium signaling process in the body, and many Ca2+/CaMactivated proteins have been studied for decades, yet there remain a number whose function and physiological roles have yet to be fully characterized [3, 5].

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