Abstract
Small molecules that deter the functions of DNA damage response machinery are postulated to be useful for enhancing the DNA damaging effects of chemotherapy or ionizing radiation treatments to combat cancer by impairing the proliferative capacity of rapidly dividing cells that accumulate replicative lesions. Chemically induced or genetic synthetic lethality is a promising area in personalized medicine, but it remains to be optimized. A new target in cancer therapy is DNA unwinding enzymes known as helicases. Helicases play critical roles in all aspects of nucleic acid metabolism. We and others have investigated small molecule targeted inhibition of helicase function by compound screens using biochemical and cell-based approaches. Small molecule-induced trapping of DNA helicases may represent a generalized mechanism exemplified by certain topoisomerase and PARP inhibitors that exert poisonous consequences, especially in rapidly dividing cancer cells. Taking the lead from the broader field of DNA repair inhibitors and new information gleaned from structural and biochemical studies of DNA helicases, we predict that an emerging strategy to identify useful helicase-interacting compounds will be structure-based molecular docking interfaced with a computational approach. Potency, specificity, drug resistance, and bioavailability of helicase inhibitor drugs and targeting such compounds to subcellular compartments where the respective helicases operate must be addressed. Beyond cancer therapy, continued and new developments in this area may lead to the discovery of helicase-interacting compounds that chemically rescue clinically relevant helicase missense mutant proteins or activate the catalytic function of wild-type DNA helicases, which may have novel therapeutic application.
Highlights
Targeting the DNA damage response and DNA repair to combat cancer became an attractive hypothesis with the original discoveries made by Thomas Helleday, Alan Ashworth and colleagues that chemicals which inhibit the DNA damage sensor poly(ADP-ribose) (PAR) polymerase 1 (PARP-1) could be used to kill breast cancer cells that are defective in the tumor suppressor genes encoding homologous recombination (HR) repair proteins BRCA1 or BRCA2 (Bryant et al, 2005; Farmer et al, 2005)
Small molecule-induced trapping of DNA helicases may represent a generalized mechanism exemplified by certain topoisomerase and PARP inhibitors that exert poisonous consequences, especially in rapidly dividing cancer cells
There has been much interest in the mechanisms of PARP inhibitors as well as topoisomerase inhibitors used in preclinical and clinical settings, and the DNA Helicases as Druggable Targets progress made in these areas have prompted biomedical researchers to investigate these and other potential therapeutic DNA repair proteins as targets to enhance the effects of chemotherapy drugs or ionizing radiation to eradicate cancer cells but spare normal cells, thereby minimizing toxicity usually associated with the DNA damaging treatments
Summary
Targeting the DNA damage response and DNA repair to combat cancer became an attractive hypothesis with the original discoveries made by Thomas Helleday, Alan Ashworth and colleagues that chemicals which inhibit the DNA damage sensor poly(ADP-ribose) (PAR) polymerase 1 (PARP-1) could be used to kill breast cancer cells that are defective in the tumor suppressor genes encoding homologous recombination (HR) repair proteins BRCA1 or BRCA2 (Bryant et al, 2005; Farmer et al, 2005). We and others have investigated small molecule targeted inhibition of helicase function by compound screens using biochemical and cell-based approaches.
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