Neuroinformatics Infrastructure for data sharing developed in J-Node

Abstract

Event Abstract Back to Event Neuroinformatics Infrastructure for data sharing developed in J-Node Yoko Yamaguchi1*, Yoshihiro Okumura1, Takayuki Kannon1, 2, Tomoki Kazawa1, 3, Sawako Suenaga1, Itsuko Ishii1, Ayumi Honda1, Miyabi Ogawa1 and Shiro Usui1 1 RIKEN Brain Science Institute, Japan 2 Kanazawa University, Graduate School of Advanced Preventive Medical Sciences, Japan 3 The University of Tokyo, Research Center for Advanced Science and Technology, Japan INCF japan Node (J-Node) has developed 14 neuroinformatics platforms. For the sake of integrative use of these databases, J-Node is now focusing on development of tools and systems for data-sharing. Main resources of the recent development are as follows. 1) XooNIps ver 4. was applied to INCF Japan Node Portal and several platforms. The new version supports user friendly custamization of metada. By using this, we have created DOI registration support system for J-Node research contents. DOI registration of research data in the test project in 2015 is followed by a regular phase on J-Node Portal. 2) Digital Brain Atlasing and semantic web were developed in collaboration among PF members. Recent activities were created at j-Node Hackathon. A number of web viewer for integrating brain atlas and related knowledge were created to promote data exchange among platforms and related projects. 3) The use of ontology for semantic web technology is one of INCF core activities. J-Node tries to incorporate J-Node contents in future integrated knowledge as semantic web. RIKEN developed RIKEN Meta Database in the use of Resource Description Framework, where some of J-Node Platforms was registered. Ontologies and tools covering across platforms and related projects are now under further elucidation. 4) To promote software/tool development as collaborative projects, we launched INCF Japan Node software center. We updated the center to include software catalog site and software development site. This center is partially open in public for everyone's use. Based on these infrastructures, J-Node tries to integrate knowledge on not only domestic but also international neuroscience and neuroinformatics. References 1) INCFJapan Node Portal URL http://www.neuroinf.jp/ 2) INCF Japan Node Hackathon URL http://www.neuroinf.jp/hackathon2016?ml 3) RIKEN Meta Database URL http://metadb.riken.jp 3) INCF Japan Node Software Center URL https://software.neuroinf.jp Keywords: brain atlasing, ontologies, platforms, Metadata Management, XooNIps Conference: Neuroinformatics 2016, Reading, United Kingdom, 3 Sep - 4 Sep, 2016. Presentation Type: Demo Topic: Infrastructural and portal services Citation: Yamaguchi Y, Okumura Y, Kannon T, Kazawa T, Suenaga S, Ishii I, Honda A, Ogawa M and Usui S (2016). Neuroinformatics Infrastructure for data sharing developed in J-Node. Front. Neuroinform. Conference Abstract: Neuroinformatics 2016. doi: 10.3389/conf.fninf.2016.20.00044 Copyright: The abstracts in this collection have not been subject to any Frontiers peer review or checks, and are not endorsed by Frontiers. They are made available through the Frontiers publishing platform as a service to conference organizers and presenters. The copyright in the individual abstracts is owned by the author of each abstract or his/her employer unless otherwise stated. Each abstract, as well as the collection of abstracts, are published under a Creative Commons CC-BY 4.0 (attribution) licence (https://creativecommons.org/licenses/by/4.0/) and may thus be reproduced, translated, adapted and be the subject of derivative works provided the authors and Frontiers are attributed. For Frontiers’ terms and conditions please see https://www.frontiersin.org/legal/terms-and-conditions. Received: 30 Apr 2016; Published Online: 18 Jul 2016. * Correspondence: Prof. Yoko Yamaguchi, RIKEN Brain Science Institute, Wako-shi, Saitama, 351-0198, Japan, yokoy@brain.riken.jp Login Required This action requires you to be registered with Frontiers and logged in. To register or login click here. Abstract Info Abstract The Authors in Frontiers Yoko Yamaguchi Yoshihiro Okumura Takayuki Kannon Tomoki Kazawa Sawako Suenaga Itsuko Ishii Ayumi Honda Miyabi Ogawa Shiro Usui Google Yoko Yamaguchi Yoshihiro Okumura Takayuki Kannon Tomoki Kazawa Sawako Suenaga Itsuko Ishii Ayumi Honda Miyabi Ogawa Shiro Usui Google Scholar Yoko Yamaguchi Yoshihiro Okumura Takayuki Kannon Tomoki Kazawa Sawako Suenaga Itsuko Ishii Ayumi Honda Miyabi Ogawa Shiro Usui PubMed Yoko Yamaguchi Yoshihiro Okumura Takayuki Kannon Tomoki Kazawa Sawako Suenaga Itsuko Ishii Ayumi Honda Miyabi Ogawa Shiro Usui Related Article in Frontiers Google Scholar PubMed Abstract Close Back to top Javascript is disabled. Please enable Javascript in your browser settings in order to see all the content on this page.