Near-Infrared Spectroscopy (NIRS) as a Method for Biological Sex Discrimination in the Endangered Houston Toad (Anaxyrus houstonensis).

Li-Dunn Chen,Mariana Santos-Rivera,Andrew J Kouba,Isabella J Burger,Carrie K Vance,Diane M Barber

doi:10.3390/mps5010004

Li-Dunn Chen, Mariana Santos-Rivera + Show 4 more

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https://doi.org/10.3390/mps5010004

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Abstract

Biological sex is one of the more critically important physiological parameters needed for managing threatened animal species because it is crucial for informing several of the management decisions surrounding conservation breeding programs. Near-infrared spectroscopy (NIRS) is a non-invasive technology that has been recently applied in the field of wildlife science to evaluate various aspects of animal physiology and may have potential as an in vivo technique for determining biological sex in live amphibian species. This study investigated whether NIRS could be used as a rapid and non-invasive method for discriminating biological sex in the endangered Houston toad (Anaxyrus houstonensis). NIR spectra (N = 396) were collected from live A. houstonensis individuals (N = 132), and distinct spectral patterns between males and females were identified using chemometrics. Linear discriminant analysis (PCA-LDA) classified the spectra from each biological sex with accuracy ≥ 98% in the calibration and internal validation datasets and 94% in the external validation process. Through the use of NIRS, we have determined that unique spectral signatures can be holistically captured in the skin of male and female anurans, bringing to light the possibility of further application of this technique for juveniles and sexually monomorphic species, whose sex designation is important for breeding-related decisions.

Highlights

Amphibians are the most threatened group of vertebrate taxa, with over 40% of species showing dramatic population declines and well over 100 species having gone extinct in the last several decades [1]
The absence of environmental cues in captive breeding programs is the primary cause for poor reproductive performance [6,7], many amphibian species are monomorphic and sex discrimination can be a hindrance to pairing animals and establishing appropriate breeding recommendations
Mature A. houstonensis individuals from the Fort Worth Zoo (Fort Worth, TX, USA) were selected for this study based on the age and visual assessment of male phenotypic characteristics or presence of eggs in females, which was identified through ultrasound imaging [16]

Summary

Introduction

Amphibians are the most threatened group of vertebrate taxa, with over 40% of species showing dramatic population declines and well over 100 species having gone extinct in the last several decades [1]. The primary contributors to amphibian extirpation include habitat loss, climate change, chemical pollutants, and infectious diseases [4]. In order to mitigate the decline of amphibian populations occurring worldwide, captive assurance colonies have been established at zoological and research institutions across the globe. Many captive populations of amphibians are either not sustainable due to low reproductive output or have low gene diversity since not all individuals breed [5]. The absence of environmental cues in captive breeding programs is the primary cause for poor reproductive performance [6,7], many amphibian species are monomorphic and sex discrimination can be a hindrance to pairing animals and establishing appropriate breeding recommendations

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