Abstract

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that causes the disease COVID-19 can lead to serious symptoms, such as severe pneumonia, in the elderly and those with underlying medical conditions. While vaccines are now available, they do not work for everyone and therapeutic drugs are still needed, particularly for treating life-threatening conditions. Here, we showed nasal delivery of a new, unmodified camelid single-domain antibody (VHH), termed K-874A, effectively inhibited SARS-CoV-2 titers in infected lungs of Syrian hamsters without causing weight loss and cytokine induction. In vitro studies demonstrated that K-874A neutralized SARS-CoV-2 in both VeroE6/TMPRSS2 and human lung-derived alveolar organoid cells. Unlike other drug candidates, K-874A blocks viral membrane fusion rather than viral attachment. Cryo-electron microscopy revealed K-874A bound between the receptor binding domain and N-terminal domain of the virus S protein. Further, infected cells treated with K-874A produced fewer virus progeny that were less infective. We propose that direct administration of K-874A to the lung could be a new treatment for preventing the reinfection of amplified virus in COVID-19 patients.

Highlights

  • Coronaviruses (CoV) are enveloped, single-stranded positive-sense RNA viruses

  • Betacoronaviruses are significant interest because they are responsible for the severe acute respiratory syndrome (SARS) and middle eastern respiratory syndrome (MERS) epidemics in the past and the coronavirus disease 2019 (COVID-19) pandemic

  • We used VHH-cDNA display for in vitro selection of VHHs against the SARS-CoV-2 S1 protein (Fig 1A). cDNA display yields functional VHHs, whose coding RNA is linked via a puromycin linker [13,14,15]

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Summary

Introduction

Coronaviruses (CoV) are enveloped, single-stranded positive-sense RNA viruses. They are divided into four genera: alpha, beta, gamma and delta. Betacoronaviruses are significant interest because they are responsible for the severe acute respiratory syndrome (SARS) and middle eastern respiratory syndrome (MERS) epidemics in the past and the coronavirus disease 2019 (COVID-19) pandemic These viruses can cause mild to severe respiratory tract infections and death in some cases. After binding to ACE2 via the RBD, a protease on the host cell surface cleaves and activates the S protein, allowing the virus membrane to fuse with the host cell membrane. Blocking this viral fusion is thought to be a promising therapeutic strategy [1,2]. Because SARS-CoV-2 infects cells in the nasal mucosa or lungs that express ACE2 [3], direct delivery of antiviral drugs to the respiratory system is expected to improve drug efficacy

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