Abstract

Extra-pulmonary mycobacterial infections are characterized by a paucibacillary nature and extra-pulmonary samples consist of different matrices; the processing of these samples requires a high level of manual skills and non-standardized procedures. The aim of this study was to compare the performance of MYCO-TB with MycoPrep on extra-pulmonary samples in terms of Mycobacteria detection, culture contamination and suitability for molecular assay. This prospective study was conducted on 201 extra-pulmonary samples from suspected cases of mycobacterial infection. Specimens were divided into two equal aliquots; one was decontaminated with MYCO-TB the other with MycoPrep. The contamination rate of liquid cultures was significantly different: 2.5% (5/201) for MYCO-TB and 7.5% (15/201) for MycoPrep (p = 0.036). At least 1 Mycobacterium tuberculosis complex (MTBc) positive culture was detected in 6 specimens treated with MYCO-TB and 8with MycoPrep, without significant differences in times to positivity (TTP) in liquid culture. No Xpert MTB/RIF Ultra invalid results were obtained with samples decontaminated with MYCO-TB. The MYCO-TB kit had greater activity than MycoPrep in the digestion and decontamination of extra-pulmonary specimens for the detection of Mycobacteria, supporting the use of MYCO-TB in this type of sample. Ready-to use reagents, rapid protocol and single-sample formulation of MYCO-TB reduced the level of manual skills required as well as the risk of sample contamination.

Highlights

  • Extra-pulmonary mycobacterial infections are characterized by a paucibacillary nature and extrapulmonary samples consist of different matrices; the processing of these samples requires a high level of manual skills and non-standardized procedures

  • Mycobacterial infections, caused by Mycobacterium tuberculosis complex (MTBc) and Non-tuberculous Mycobacteria (NTM), are frequently associated with lung disease and most commercial IVD products intended for the detection of Mycobacteria have been designed for respiratory specimens

  • Liquid culture of 10 samples (5 urine and 5 purulent samples) were negative with MYCO-TB, whereas treatment with MycoPrep did not prevent contamination; in these samples Gramnegative bacteria were isolated in 7 cases and Gram-positive in 3

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Summary

Introduction

Extra-pulmonary mycobacterial infections are characterized by a paucibacillary nature and extrapulmonary samples consist of different matrices; the processing of these samples requires a high level of manual skills and non-standardized procedures. The aim of this study was to compare the performance of MYCO-TB with MycoPrep on extra-pulmonary samples in terms of Mycobacteria detection, culture contamination and suitability for molecular assay. This prospective study was conducted on 201 extra-pulmonary samples from suspected cases of mycobacterial infection. The process of digesting and decontaminating extra-pulmonary samples requires a high level of manual skill to prepare reagents, which are often not available in bulk, as well as to process samples with non-standardized procedures

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