Abstract

Mutations in either the mitochondrial or nuclear genomes are associated with a diverse group of human disorders characterized by impaired mitochondrial respiration. Within this group, an increasing number of mutations have been identified in nuclear genes involved in mitochondrial RNA metabolism, including ELAC2. The ELAC2 gene codes for the mitochondrial RNase Z, responsible for endonucleolytic cleavage of the 3′ ends of mitochondrial pre‐tRNAs. Here, we report the identification of 16 novel ELAC2 variants in individuals presenting with mitochondrial respiratory chain deficiency, hypertrophic cardiomyopathy (HCM), and lactic acidosis. We provide evidence for the pathogenicity of the novel missense variants by studying the RNase Z activity in an in vitro system. We also modeled the residues affected by a missense mutation in solved RNase Z structures, providing insight into enzyme structure and function. Finally, we show that primary fibroblasts from the affected individuals have elevated levels of unprocessed mitochondrial RNA precursors. Our study thus broadly confirms the correlation of ELAC2 variants with severe infantile‐onset forms of HCM and mitochondrial respiratory chain dysfunction. One rare missense variant associated with the occurrence of prostate cancer (p.Arg781His) impairs the mitochondrial RNase Z activity of ELAC2, suggesting a functional link between tumorigenesis and mitochondrial RNA metabolism

Highlights

  • Mitochondria are essential for cell function through their involvement in ATP synthesis by oxidative phosphorylation (OXPHOS), and host a number of other biosynthetic pathways

  • We report the identification of 16 additional ELAC2 variants in individuals who present with mitochondrial respiratory chain deficiency, hypertrophic cardiomyopathy (HCM), and lactic acidosis

  • HCM and lactic acidosis are frequent presentations in some mitochondrial diseases related to dysfunctional mt‐tRNA maturation, such as those caused by biallelic variants in MTO1 (MIM# 614667), GTPBP3 (MIM# 608536), AARS2 (MIM# 612035) and RARS2 (MIM# 611524; Ghezzi et al, 2012; Gotz et al, 2011; Kopajtich et al, 2014; Lax et al, 2015)

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Summary

| INTRODUCTION

Mitochondria are essential for cell function through their involvement in ATP synthesis by oxidative phosphorylation (OXPHOS), and host a number of other biosynthetic pathways. Whereas the majority of the mitochondrial proteome is encoded in the cell nucleus and imported into the mitochondria following synthesis on cytosolic ribosomes, 13 essential subunits of the OXPHOS system are synthesized within the organelle. We investigated the functional consequences of ELAC2 variants in patients presenting with a recessively inherited form of hypertrophic cardiomyopathy (HCM), hypotonia, lactic acidosis, and failure to thrive (Haack et al, 2013). This previous work identified a total of four disease alleles (coding for p.Phe154Leu, p.Arg211*, p.Leu423Phe, and p.Thr520Ile) in three families. Modeling of the missense substitutions provided additional insight into the effects of substitutions on enzyme structure

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