Abstract

The p53 tumor suppressor gene acquires missense mutations in over 50% of human cancers, and most of these mutations occur within the central core DNA binding domain. One structurally defined region of the core, the L1 loop (residues 112-124), is a mutational "cold spot" in which relatively few tumor-derived mutations have been identified. To further understand the L1 loop, we subjected this region to both alanine- and arginine-scanning mutagenesis and tested mutants for DNA binding in vitro. Select mutants were then analyzed for transactivation and cell cycle analysis in either transiently transfected cells or cells stably expressing wild-type and mutant proteins at regulatable physiological levels. We focused most extensively on two p53 L1 loop mutants, T123A and K120A. The T123A mutant p53 displayed significantly better DNA binding in vitro as well as stronger transactivation and apoptotic activity in vivo than wild-type p53, particularly toward its pro-apoptotic target AIP1. By contrast, K120A mutant p53, although capable of strong binding in vitro and wild-type levels of transactivation and apoptosis when transfected into cells, showed impaired activity when expressed at normal cellular levels. Our experiments indicate a weaker affinity for DNA in vivo by K120A p53 as the main reason for its defects in transactivation and apoptosis. Overall, our findings demonstrate an important, yet highly modular role for the L1 loop in the recognition of specific DNA sequences, target transactivation, and apoptotic signaling by p53.

Highlights

  • The heading “Relative to wild-type p53 DNA binding” indicates affinity for p21 oligonucleotide when compared with wild-type p53, ranging from inert (s), reduced [2], equivalent binding [7], increased [1] to super-active (a)

  • The heading Sequence specificity indicates variable affinity depending on the target analyzed, as discussed in the text

  • Because p53 core domain mutants vary in their affinities for different versions of the p53 consensus sequence (Ref. 27 and references therein), we tested oligonucleotide probes with binding sites derived from p53 downstream targets involved in apoptosis

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Summary

EXPERIMENTAL PROCEDURES

P53 protein was visualized by separating 4 ␮g of whole-cell lysate (40 ␮g for inducible cells) or an indicated amount of reticulocyte lysate on a 10% polyacrylamide gel, transferring to nitrocellulose, followed by immunoblotting with a mixture of anti-p53 antibodies (1801 and DO-1) for 45 min at room temperature. Tet-off Inducible Cell Lines—H1299-derived inducible cell lines were created using a two-step tetracycline-regulated system and clonally selected with 400 ␮g/ml hygromycin B (Invitrogen), as described previously [39]. Fixed cells and fragmented DNA were spun down for 5 min at 2400 rpm (1660 ϫ g), resuspended with 1 ml of cold phosphate-buffered saline, and rehydrated for 30 min on ice [41]. Chromatin Immunoprecipitation—Inducible cells were seeded to 80% density in 10-cm plates, and protein expression was induced for 24 h as described above. Primer sequences are listed as follows along with their respective annealing temperatures and cycles in parentheses: p21-5Ј (56 °C, 29 cycles) forward, 5Ј-CTGGACTGGGCACTCTTGTC-3Ј, and reverse, 5Ј-CTCCTACCATCCCCTTCCTC-3Ј; p21-neg (56 °C, 29 cycles) forward, 5Ј-GGAGTCCTGTTTGCTTCTGG-3Ј, and reverse 5Ј-CTTTGGCCACACTGAGGAAT-3Ј; PIG3 (56 °C, 29 cycles) forward, 5Ј-AGGAGGCGAGTGATAAGGATCC-3Ј, and reverse, 5ЈAACCTCTTGGCGGGCGGATTGG-3Ј; and AIP1 (57 °C, 34 cycles) forward, 5Ј-CTCCCTTCTCCTAGCTCTGT-3Ј, and reverse, 5Ј-CAGCATCAGGAAGTTCATCT-3Ј

RESULTS
Sequence specificity
DISCUSSION
Full Text
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