Multiscale Modelling of Membrane Systems

Abstract

We have developed both 10- and 2-site molecular dynamics simulation models of biological membranes, tested their ability to model various lipid phases, and to reproduce important membrane physical properties, particularly the lateral pressure profile which is critical in determining the phases adopted in lipid systems [1]. The novelty in these models lies predominantly in the way they capture shape anisotropy, and the realistic way in which electrostatic interactions are incorporated. Furthermore, through careful design, the 10-site model in particular is compatible with atomistic models, allowing multiscale simulations of membrane systems [2].In this presentation, the design philosophy and parameterisation procedures for these models will be described, together with their validation, with a particular focus on their lateral pressure profiles and phase behaviour. The application of these models in the context of multiscale simulations will then be considered. First, their use to calculate the permeability coefficients of small molecules through phospholipid bilayers, by combining molecular dynamics simulations with constraints, will be outlined [3]. Second, the effect of small molecules on membrane properties will be discussed, focusing particularly on antibacterials, which, it is postulated, may work through modifying the underlying physics of the membrane.[1] M. Orsi, D. Y. Haubertin, W. E. Sanderson and J. W. Essex, J. Phys. Chem. B, 2008, 112, 802-815.[2] J. Michel, M. Orsi and J. W. Essex, J. Phys. Chem. B, 2008, 112, 657-660.[3] M. Orsi, W.E. Sanderson and J.W. Essex, J. Phys. Chem. B, 2009, 113, 12019-12029.