Abstract

Data-driven models of functional magnetic resonance imaging (fMRI) activity can elucidate dependencies that involve the combination of multiple brain regions. Activity in some regions during resting-state fMRI can be predicted with high accuracy from the activities of other regions. However, it remains unclear in which regions activity depends on unique integration of multiple predictor regions. To address this question, sparse (parsimonious) models could serve to better determine key interregional dependencies by reducing false positives. We used resting-state fMRI data from 46 subjects, and for each region of interest (ROI) per subject we performed whole-brain recursive feature elimination (RFE) to select the minimal set of ROIs that best predicted activity in the modeled ROI. We quantified the dependence of activity on multiple predictor ROIs, by measuring the gain in prediction accuracy of models that incorporated multiple predictor ROIs compared to models that used a single predictor ROI. We identified regions that showed considerable evidence of multiregional integration and determined the key regions that contributed to their observed activity. Our models reveal fronto-parietal integration networks, little integration in primary sensory regions, as well as redundancy between some regions. Our study demonstrates the utility of whole-brain RFE to generate data-driven models with minimal sets of ROIs that predict activity with high accuracy. By determining the extent to which activity in each ROI depended on integration of signals from multiple ROIs, we find cortical integration networks during resting-state activity.

Highlights

  • Data-driven models constrained with functional magnetic resonance imaging data can elucidate some of the dependencies that involve a combination of multiple brain regions underlying the observed activity

  • Activity in some regions during resting-state functional magnetic resonance imaging (fMRI) can be predicted with high accuracy from the activities of other regions. It remains unclear in which regions activity depends on unique integration of multiple predictor regions

  • Models of fMRI activity can elucidate underlying dependencies that involve the combination of multiple brain regions

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Summary

Introduction

Data-driven models constrained with functional magnetic resonance imaging (fMRI) data can elucidate some of the dependencies that involve a combination of multiple brain regions underlying the observed activity. While previous models of ROI resting-state activity achieved high prediction accuracy [1], it remains unclear in which ROIs resting-state activity depends on multiregional integration. Finding a minimal set of ROIs that predict activity in a modeled ROI with high accuracy could serve to reduce false positives and better estimate the key ROIs involved and their contribution to the observed activity in the given ROI. To address this question, methods of feature selection, which generate sparser models and relate prediction accuracy to the number of predictors in the model, are useful

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