Abstract
Efficient screening method is the prerequisite for getting plant growth-promoting (PGP) rhizobacteria (PGPR) which may play an important role in sustainable agriculture from the natural environment. Many current traditional preliminary screening criteria based on knowledge of PGP mechanisms do not always work well due to complex plant–microbe interactions and may lead to the low screening efficiency. More new screening criteria should be evaluated to establish a more effective screening system. However, the studies focused on this issue were not enough, and few new screening criteria had been proposed. The aim of this study was to analyze the correlation between the metabolic phenotypes of rhizobacterial isolates and their PGP ability. The feasibility of using these phenotypes as preliminary screening criteria for PGPR was also evaluated. Twenty-one rhizobacterial isolates were screened for their PGP ability, traditional PGP traits, and multiple metabolic phenotypes that are not directly related to PGP mechanisms, but are possibly related to rhizosphere colonization. Correlations between the PGP traits or metabolic phenotypes and increases in plant agronomic parameters were analyzed to find the indicators that are most closely related to PGP ability. The utilization of 11 nutrient substrates commonly found in root exudates, such as D-salicin, β-methyl-D-glucoside, and D-cellobiose, was significantly positively correlated with the PGP ability of the rhizobacterial isolates. The utilization of one amino acid and two organic acids, namely L-aspartic acid, α-keto-glutaric acid, and formic acid, was negatively correlated with PGP ability. There were no significant correlations between four PGP traits tested in this study and the PGP ability. The ability of rhizobacterial isolates to metabolize nutrient substrates that are identical or similar to root exudate components may act as better criteria than PGP traits for the primary screening of PGPR, because rhizosphere colonization is a prerequisite for PGPR to affect plants.
Highlights
The rhizosphere, which is the niche influenced by plant roots, is a hot spot for microbial activities in the soil (Hinsinger and Marschner, 2006)
A total of 90 rhizobacterial isolates were obtained from the surface of the soybean nodules and they were screened for traditional PGP traits
In the three co-inoculation experiments, soybean plants inoculated with isolates CCNWSX1528 had an average nodule number of 35 ± 2, and significantly increased root and shoot dry weight by 29.9 and 46.5% (p < 0.01, n = 24) compared to the plants no-inoculated, respectively
Summary
The rhizosphere, which is the niche influenced by plant roots, is a hot spot for microbial activities in the soil (Hinsinger and Marschner, 2006). Plant growth-promoting rhizobacteria (PGPR) are regarded as an important component of biofertilizers and have great potential for application in sustainable agriculture (Vessey, 2003; Backer et al, 2018). There is a huge number and great diversity of microorganisms that colonize the rhizosphere, and new culture techniques allow us to obtain thousands of isolates simultaneously from the environment. It remains challenging to identify a few key strains with the best PGP performance by screening a large number of isolates obtained from the rhizosphere niche (Bai et al, 2015; Ling et al, 2015). The data from field trials provide the most accurate basis for screening the best PGPR strains for application in agriculture (Tabassum et al, 2017). The large time requirements and high cost of field trials limit their application for large-scale screening of PGPR strains (Moretti et al, 2020)
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