Multi-Dimensional Visualization of Bioinformatics Tools Classification and Its Transformation – For Quality Assessment

Abstract

Bioinformatics aims at computing biology at molecular level where day to day discovery of enormous tools and techniques have been developed. These tools and techniques are involved in solving biological problem which involves data analysis and interpretation of accurate results. Some of the diverse analysis processes of theses developed tools are sequence analysis, functional analysis, structural analysis and similarity and homology analysis. In tools development various factors that are to be taken into consideration where quality plays a vital role from the view point of end users. Quality assessment of the tools is necessary before involving the tool utilization for major purpose. Assessment of tools quality has been considered based on the tools usage considering its features and functionalities. Tools evaluation by means of its features and functionalities is one of the major standards adopted. Visualized representation is more effective than any other modes of representation is profound one which have been adopted in this paper. A visualized model for tools classification and categorization based on its features and functionalities in multi-dimensional form have been symbolized. Here modes of tools classifications and categorization using its features and functionalities multi-dimensionally have been narrated. The adopted standard model will play vital role for pre-primary quality assessment for a large set of tools. Quality assessment is made on ten tools and results have been analyzed. The model adopted here is a standard which could be adopted for any tools in any area. calculation of atomic structures of double-helica l. Sequence Analysis tools includes database searches like text based search, sequence based search, motif based search, structure based search and various tools have also been developed. Since these tools and techniques in the area of bioinformatics are involved in solving real time biological problem with better decision making. Most of the bioinformatics related applications and tools utilize databases NCBI, PDB, EMBDL, Medline etc… which has been developed to share its resources. There is enormous development of tool for specific performance so it is necessary to carry out for a large set of tools to reduce to make selection of set of better tools based quality assessed. Since these tools are involved in solving real world biological problems, it is necessary carry out quality assessment before utilizing or involving the tool for major purpose. In this paper a visualized standard model for classifying and categorizing the tools features and functionalities have been represented based on various analysis and study made on bioinformatics tools. Apart from this the model mainly involves the representing the set of tools classifications multi-dimensionally which could be transformed. Primarily the multi-dimensional representation is done in 3-D as a starting point and slowly incremental transformation is made towards n-dimension. This model has been carried out as a pre-primary evaluation on large set of similar functionality tools in order to reduce the number of tools for best usage. In section II we represent the ways for classifying and categorizing based on the detailed study made on tools. In section III sample set of ten bioinformatics tools have been taken for representing classification and categorization of the