Abstract

MELAS (mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes) is an OXPHOS disease mostly caused by the m.3243A>G mutation in the mitochondrial tRNALeu(UUR) gene. Recently, we have shown that the mutation significantly changes the expression pattern of several mitochondrial tRNA-derived small RNAs (mt tsRNAs or mt tRFs) in a cybrid model of MELAS and in fibroblasts from MELAS patients versus control cells. Among them are those derived from mt tRNA LeuUUR containing or not the m.3243A>G mutation (mt 5′-tRF LeuUUR-m.3243A>G and mt 5′-tRF LeuUUR), whose expression levels are, respectively, increased and decreased in both MELAS cybrids and fibroblasts. Here, we asked whether mt 5′-tRF LeuUUR and mt 5′-tRF LeuUUR-m.3243A>G are biologically relevant and whether these mt tRFs are detected in diverse patient samples. Treatment with a mimic oligonucleotide of mt tRNA LeuUUR fragment (mt 5′-tRF LeuUUR) showed a therapeutic potential since it partially restored mitochondrial respiration in MELAS cybrids. Moreover, these mt tRFs could be detected in biofluids like urine and blood. We also investigated the participation of miRNA pathway components Dicer and Ago2 in the mt tRFs biogenesis process. We found that Dicer and Ago2 localize in the mitochondria of MELAS cybrids and that immunoprecipitation of these proteins in cytoplasm and mitochondria fractions revealed an increased mt tRF/mt tRNA ratio in MELAS condition compared to WT. These preliminary results suggest an involvement of Dicer and Ago2 in the mechanism of mt tRF biogenesis and action.

Highlights

  • Mitochondria activity is genetically controlled by both mitochondrial and nuclear genomes

  • We demonstrated that the components of miRNA pathway Dicer and Ago2 are located in a fraction of mitochondria from WT and MELAS cybrids

  • Further experiments are needed to confirm whether (i) this is a direct interaction and (ii) this occurs in vivo, it is tentative to speculate that Dicer participates in the biogenesis of mt tRFs and that its activity is specially stimulated in the MELAS condition in basis of the increased ratio mt tRF/mt tRNA compared to WT

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Summary

Introduction

Mitochondria activity is genetically controlled by both mitochondrial and nuclear genomes Mutations in those DNAs can lead to diseases owing to OXPHOS deficiency, which are accompanied with extremely variable clinical manifestations (Rotig, 2011; DiMauro et al, 2013; Boczonadi and Horvath, 2014). Several studies have addressed the engagement of microRNAs (miRNAs) in the cell response to mitochondrial dysfunction (Meseguer et al, 2015, 2017, 2018; Wang et al, 2017); they seem not to be the unique type of sncRNAs that participate in the mitochondria–nucleus communication mt tRFs, New Participants in MELAS (Vendramin et al, 2017; Meseguer et al, 2019; Meseguer, 2021). Since they can interact with various Argonaute (AGO) proteins and form biologically active complexes (Burroughs et al, 2011; Wang et al, 2013; Kuscu et al, 2018), tRFs could act as negative post-transcriptional regulators of specific mRNAs, as miRNAs do (Yeung et al, 2009; Kuscu et al, 2018)

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