Abstract

Dendritic spines are described as neuronal protrusions. The morphology of dendritic spines and dendrites has a strong relationship to its function, as well as playing an important role in understanding brain function. Quantitative analysis of dendrites and dendritic spines is essential to an understanding of the formation and function of the nervous system. However, highly efficient tools for the quantitative analysis of dendrites and dendritic spines are currently undeveloped. In this paper we propose a novel three-step cascaded algorithm–RTSVM— which is composed of ridge detection as the curvature structure identifier for backbone extraction, boundary location based on differences in density, the Hu moment as features and Twin Support Vector Machine (TSVM) classifiers for spine classification. Our data demonstrates that this newly developed algorithm has performed better than other available techniques used to detect accuracy and false alarm rates. This algorithm will be used effectively in neuroscience research.

Highlights

  • The dendrite is defined as the branched projection of a neuron

  • Twin support vector machine (SVM) classifies the spines as pseudo or positive—with positive spines being sub-classified by shape (mushroom, stubby or thin (Nimchinsky, Sabatini & Svoboda, 2002)) according to their Hu Moments invariants features (Hu & Mingkuei, 1962)

  • This paper proposed a method based on the ridge detection for dendrite backbone and Twin Support Vector Machine (TSVM) for the classification

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Summary

Introduction

The dendrite is defined as the branched projection of a neuron. The dendritic spine is described as neuronal protrusions attached to the neuronal dendrites (Wang et al, 2015). The structure of the spine is composed of a small head which is connected to the shaft of the dendrite by its thin neck. They work by assisting the transmission of electrical signals to the neuronal soma and providing essential energy storage for the synapses. Statistics show that the length of the spine is usually between 0.5–2 μm with some measurements of the Cornu Ammonis three (CA3) region of the hippocampus measuring up to 6 μ. Volume ranges from 0.01 μm to 0.8 μ3 (Zito & Murthy, 2002)

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