Monomolecular reaction networks: Flux‐influenced sets and balloons

Abstract

In living cells, we can observe a variety of complex network systems such as metabolic network. Studying their sensitivity is one of the main approaches for understanding the dynamics of these biological systems. The study of the sensitivity is done by increasing/decreasing, or knocking out separately, each enzyme mediating a reaction in the system and then observing the responses in the concentrations of chemicals or their fluxes. However, because of the complexity of the systems, it has been unclear how the network structures influence/determine the responses of the systems. In this study, we focus on monomolecular networks at steady state and establish a simple criterion for determining regions of influence when any one of the reaction rates is perturbed through sensitivity experiments of enzyme knock‐out type. Specifically, we study the network response to perturbations of a reaction rate j∗ and describe which other reaction rates respond by non‐zero reaction flux, at steady state. Non‐zero responses of to j∗ are called flux‐influence of j∗ on . The main and most important aspect of this analysis lies in the reaction graph approach, in which the chemical reaction networks are modelled by a directed graph. Our whole analysis is function‐free, ie, in particular, our approach allows a graph theoretical description of sensitivity of chemical reaction networks. We emphasize that the analysis does not require numerical input but is based on the graph structure only. Our specific goal here is to address a topological characterization of the flux‐influence relation in the network. In fact we characterize and describe the whole set of reactions influenced by a perturbation of any specific reaction.