Monitoring and managing genetic variation in group breeding populations without individual pedigrees

Abstract

The genetic management of captive populations to conserve genetic variation is currently based on analyses of individual pedigrees to infer inbreeding and kinship coefficients and values of individuals as breeders. Such analyses require that individual pedigrees are known and individual pairing (mating) can be controlled. Many species in captivity, however, breed in groups due to various reasons, such as space constraints and fertility considerations for species living naturally in social groups, and thus have no pedigrees available for the traditional genetic analyses and management. In the absence of individual pedigree, such group breeding populations can still be genetically monitored, evaluated and managed by suitable population genetics models using population level information (such as census data). This article presents a simple genetic model of group breeding populations to demonstrate how to estimate the genetic variation maintained within and among populations and to optimise management based on these estimates. A numerical example is provided to illustrate the use of the proposed model. Some issues relevant to group breeding, such as the development and robustness evaluation of the population genetics model appropriate for a particular species under specific management and recording systems and the genetic monitoring with markers, are also briefly discussed.