Molecular spectroscopic and molecular simulation studies on the interaction of oral contraceptive drug Ormeloxifene with CT–DNA

Abstract

The interaction between oral contraceptive drug Ormeloxifene (ORM) and calf thymus DNA (CT–DNA) was studied using UV–Vis, fluorescence, circular dichroism (CD) and 1H NMR spectral techniques under physiological buffer (pH 7.4). Competitive binding assays with ethidium bromide (EB) and Hoechst 33258, viscosity measurements, KI quenching studies, molecular docking and metadynamics simulation studies were also substantiated the spectroscopic results. ORM is found to binds in the minor groove of CT–DNA as evidenced by: (1) non–displacement of EB from EB/CT–DNA complex; (2) appreciable displacement of Hoechst 33258 from its CT–DNA complex; (3) slight alteration in the CD signal; (4) small shifts (Δδ < 0.033 ppm) without broadening in 1H NMR signals and (5) the nearly equal extent of quenching of fluorescence of ORM by KI in the absence and presence of CT–DNA. Negative values of both enthalpy and entropy changes pointed out that the interaction between ORM and CT–DNA is governed mainly by H–bonding and van der Waals forces. Negative free energy change suggested a spontaneous interaction between ORM and CT–DNA. The free energy landscape of the binding process was computed using metadynamics simulation. The simulation study results disclosed that ORM binds to the minor groove of DNA through H–bonding and π–π stacking interactions. The results of molecular docking and simulation studies corroborate the available experimental data.