Abstract
Molecular modelling studies show that an anthraquinone attached to an oligodeoxynucleotide is forced to adopt a perpendicular orientation of intercalation, and that the site of the intercalation is found at the triplex-duplex junction. In addition, the optimum length for the linking-chain between the anthraquinone and the 5′ phosphate of the oligodeoxynucleotide is five carbons.
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