Abstract

A great variety of molecular components is encapsulated in cells. Each of these components is replicated for cell reproduction. To address the essential role of the huge diversity of cellular components, we studied a model of protocells that convert resources into catalysts with the aid of a catalytic reaction network. As the resources were limited, the diversity in the intracellular components was found to be increased to allow the use of diverse resources for cellular growth. A scaling relation was demonstrated between resource abundances and molecular diversity. In the present study, we examined how the molecular species diversify and how complex catalytic reaction networks develop through an evolutionary course. At some generations, molecular species first appear as parasites that do not contribute to the replication of other molecules. Later, the species turn into host species that contribute to the replication of other species, with further diversification of molecular species. Thus, a complex joint network evolves with this successive increase in species. The present study sheds new light on the origin of molecular diversity and complex reaction networks at the primitive stage of a cell.

Highlights

  • Diversity is one of the fascinating features of life

  • Diverse molecular species are encapsulated and coexist in cellular compartments; they are synthesized with the aid of catalysts for cell reproduction

  • Why do cells have so many components? This question arises because such a great diversity of molecular species is not a strict requirement for cell reproduction

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Summary

Introduction

Diversity is one of the fascinating features of life. Diverse molecular species are encapsulated and coexist in cellular compartments; they are synthesized with the aid of catalysts for cell reproduction. The number of species increases in a cell, and constitutes a connected reaction network In principle, such a complex network is not essential for high fitness (growth rate), but the evolutionary constraint selects such a connected network rather than disconnected ones. The species Xi does not catalyze the replication of itself and that of molecules that directly catalyze the replication of Xi. Once the catalytic reaction network is determined, it does not change throughout each simulation and is identical for all cells. One cell is randomly taken out from the system and removed, to fix the total number of cells at NC This leads to the selection of a protocell that can grow faster under a given resource condition

Diversification under Resource Limitation
The Number of Species Is Essential for High Growth Rate
Discussion
Materials and Methods
Full Text
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