Abstract

This review highlights the fundamental role of nutrition in the maintenance of health, the immune response, and disease prevention. Emerging global mechanistic insights in the field of nutritional immunology cannot be gained through reductionist methods alone or by analyzing a single nutrient at a time. We propose to investigate nutritional immunology as a massively interacting system of interconnected multistage and multiscale networks that encompass hidden mechanisms by which nutrition, microbiome, metabolism, genetic predisposition, and the immune system interact to delineate health and disease. The review sets an unconventional path to apply complex science methodologies to nutritional immunology research, discovery, and development through “use cases” centered around the impact of nutrition on the gut microbiome and immune responses. Our systems nutritional immunology analyses, which include modeling and informatics methodologies in combination with pre-clinical and clinical studies, have the potential to discover emerging systems-wide properties at the interface of the immune system, nutrition, microbiome, and metabolism.

Highlights

  • The knowledge that food affects health was first mentioned in the writings of ancient Egyptians and Indians [1,2,3]

  • The results showed that apricot extracts increased ABAp (ABA plasma levels) higher than glucose did, which led them to the conclusion that high bioavailability of oral abscisic acid (ABA) can be obtained from the fruit extracts

  • A comprehensive level understanding of the complex mechanisms underlying the combinatorial effect of nutrients is challenging, a systems-wide approach integrated with computational modeling and informatics can aid in elucidating this complex process

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Summary

Frontiers in Nutrition

Received: 23 October 2015 Accepted: 01 February 2016 Published: 16 February 2016. Citation: Verma M, Hontecillas R, Abedi V, Leber A, Tubau-Juni N, Philipson C, Carbo A and Bassaganya-Riera J (2016) Modeling-Enabled Systems. This review highlights the fundamental role of nutrition in the maintenance of health, the immune response, and disease prevention. We propose to investigate nutritional immunology as a massively interacting system of interconnected multistage and multiscale networks that encompass hidden mechanisms by which nutrition, microbiome, metabolism, genetic predisposition, and the immune system interact to delineate health and disease. The review sets an unconventional path to apply complex science methodologies to nutritional immunology research, discovery, and development through “use cases” centered around the impact of nutrition on the gut microbiome and immune responses. Our systems nutritional immunology analyses, which include modeling and informatics methodologies in combination with pre-clinical and clinical studies, have the potential to discover emerging systems-wide properties at the interface of the immune system, nutrition, microbiome, and metabolism

INTRODUCTION
Interplay between Microbiome and Nutrition
System and Microbiome
Understanding Reductionist Approaches toward Nutritional Immunology
Computational Tools
Modeling and Multiscale Modeling
CHALLENGES IN COMPUTATIONAL CAPABILITIES
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