Microscopy cell segmentation via adversarial neural networks

Abstract

We present a novel method for cell segmentation in microscopy images which is inspired by the Generative Adversarial Neural Network (GAN) approach. Our framework is built on a pair of two competitive artificial neural networks, with a unique architecture, termed Rib Cage, which are trained simultaneously and together define a min-max game resulting in an accurate segmentation of a given image. Our approach has two main strengths, similar to the GAN, the method does not require a formulation of a loss function for the optimization process. This allows training on a limited amount of annotated data in a weakly supervised manner. Promising segmentation results on real fluorescent microscopy data are presented. The code is freely available at: https://github.com/arbellea/DeepCellSeg.git