Abstract

Influenza A viruses are important pathogens of humans and animals. While seasonal influenza viruses infect humans every year, occasionally animal-origin viruses emerge to cause pandemics with significantly higher morbidity and mortality rates. In March 2013, the public health authorities of China reported three cases of laboratory confirmed human infection with avian influenza A (H7N9) virus, and subsequently there have been many cases reported across South East Asia and recently in North America. Most patients experience severe respiratory illness, and morbidity with mortality rates near 40%. No vaccine is currently available and the use of antivirals is complicated due the frequent emergence of drug resistant strains. Thus, there is an imminent need to identify new drug targets for therapeutic intervention. In the current study, a high-throughput screening (HTS) assay was performed using microRNA (miRNA) inhibitors to identify new host miRNA targets that reduce influenza H7N9 replication in human respiratory (A549) cells. Validation studies lead to a top hit, hsa-miR-664a-3p, that had potent antiviral effects in reducing H7N9 replication (TCID50 titers) by two logs. In silico pathway analysis revealed that this microRNA targeted the LIF and NEK7 genes with effects on pro-inflammatory factors. In follow up studies using siRNAs, anti-viral properties were shown for LIF. Furthermore, inhibition of hsa-miR-664a-3p also reduced virus replication of pandemic influenza A strains H1N1 and H3N2.

Highlights

  • Influenza virus is still a serious global health threat affecting humans, wildlife and agricultural species

  • A human genome wide high-throughput screening (HTS) was performed in A549 cells using miRNA inhibitors to reveal possible host targets that are important for H7N9 replication

  • All Small interfering RNA (siRNA) had prior been evaluated for their efficacy in downregulating the specific messenger RNA (mRNA) by RT-qPCR (S1 Fig). These results demonstrate that combining HTS and RNA interference (RNAi) can lead to the rapid discovery of host cellular targets and the underlying pathways that participate in virus replication

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Summary

Introduction

Influenza virus is still a serious global health threat affecting humans, wildlife and agricultural species. Human infection with avian influenza A H7N9 virus (H7N9) were first reported in China in March 2013 [1] Most of the infections are believed to have resulted from exposure to infected poultry or contaminated environments, as H7N9 viruses have been found in poultry in China. While some mild illnesses in humans infected with H7N9 has been reported, most patients experienced severe respiratory illness, such as pneumonia (97.3%) and acute respiratory distress syndrome (71.2%), leading to high rates of intensive care unit admissions [2]. Human mortality attributed to influenza H7N9 is over 38% with 175 deaths from 450 confirmed cases within a 20-month period [3]. No evidence of sustained human-to-human transmission of H7N9 has been recorded; there was some evidence for limited person-to

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