Abstract
Multidimensional gradients of inorganic compounds influence microbial activity in diverse pristine and anthropogenically perturbed environments. Here, we suggest that high-throughput cultivation and genetics can be systematically applied to generate quantitative models linking gene function, microbial community activity, and geochemical parameters. Metal resistance determinants represent a uniquely universal set of parameters around which to study and evaluate microbial fitness because they represent a record of the environment in which all microbial life evolved. By cultivating microbial isolates and enrichments in laboratory gradients of inorganic ions, we can generate quantitative predictions of limits on microbial range in the environment, obtain more accurate gene annotations, and identify useful strategies for predicting and engineering the trajectory of natural ecosystems.
Highlights
Multidimensional gradients of inorganic compounds influence microbial activity in diverse pristine and anthropogenically perturbed environments
It is possible to fill microplates with arrays of compounds or serially diluted solutions to simultaneously evaluate the influence of hundreds to tens of thousands of parameters on microbial growth kinetics and metabolism[7]
Microbial niche space is often viewed as an n-dimensional matrix in which antimetabolites, carbon sources, and essential nutrients influence the ability of a microorganism or microbial community to grow and survive[13,14]
Summary
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